Lipid transfer inhibitor protein (LTIP) is a regulator of cholesteryl ester transfer protein (CETP) function. Factors affecting plasma LTIP levels are poorly understood. In humans, plasma LTIP is elevated in hypercholesterolemia. To define possible mechanisms by which hyperlipidemia modifies LTIP, we investigated the effects of hypercholesterolemic diets on plasma LTIP and mRNA levels in experimental animals. The hamster, which naturally expresses CETP, was shown to express LTIP. Hamster LTIP mRNA, exclusively detected in the liver, defined a predicted LTIP protein that is 69% homologous to human, with an isoelectric point of 4.15 and Mr 5 ?16.4 kDa. Hyperlipidemia induced by feeding hydrogenated coconut oil, cholesterol, or both lipids increased plasma LTIP mass up to 2.5-fold, with LTIP mass correlating strongly with plasma cholesterol levels. CETP mass was similarly affected by these diets. In contrast, these diets reduced LTIP hepatic mRNA levels by .50%, whereas CETP mRNA was increased. Similar results for both CETP and LTIP were also observed in cholesterolfed rabbits. In conclusion, we report in hamster and rabbit that dietary lipids regulate LTIP. Diet-induced hypercholesterolemia markedly increased plasma LTIP mass while concomitantly depressing LTIP gene expression. CETP and LTIP have distinct responses to dietary lipids.-Izem, L., and R. E. Morton. Molecular cloning of hamster lipid transfer inhibitor protein (apolipoprotein F) and regulation of its expression by hyperlipidemia. J. Lipid Res. 2009. 50: 676-684. Supplementary key words rabbit • cholesterol • hydrogenated coconut oil Cholesteryl ester transfer protein (CETP) is an important regulator of lipoprotein composition, and its activity affects plasma lipoprotein levels (1-3). Lipid transfer inhibitor protein (LTIP), also known as apolipoprotein F (apoF), impacts CETP activity in a unique way compared with other factors that have been proposed to regulate CETP activity. Unlike general inhibitors of CETP activity, LTIP tailors CETP-mediated transfer events, inhibiting some and promoting others (4, 5). We have proposed that the balance of CETP and LTIP activities is important in defining the flux of CETP substrates, cholesteryl ester, and triglyceride, between lipoproteins (5-7).Factors affecting plasma levels of LTIP are poorly understood. In several human studies, LTIP levels were shown to correlate negatively with triglyceride levels (6, 8), although this correlation appears to occur only in males (6). However, LTIP levels are elevated in hypercholesterolemia (8). In comparison, CETP levels are increased in hypercholesterolemic subjects and typically unchanged in hypertriglyceridemic subjects (9-11). In cholesterol-fed animals, increased plasma CETP levels are accompanied by marked increases in hepatic and extrahepatic CETP mRNA (12-15), but it is not known how cholesterol feeding affects plasma levels of LTIP or LTIP gene expression.To understand the changes in plasma LTIP that are observed in various hyperlipidemic patient populat...