Rotavirus, the leading cause of diarrheal diseases in children under the age of five, is often resistant to conventional wastewater treatment and thus can remain infectious once released into the aquatic environment. Solar and heat treatments can inactivate rotavirus, but it is unknown how these treatments inactivate the virus on a molecular level. To answer this question, our approach was to correlate rotavirus inactivation with the inhibition of portions of the virus life cycle as a means to identify the mechanisms of solar or heat inactivation. Specifically, the integrity of the rotavirus NSP3 gene, virus-host cell interaction, and viral RNA synthesis were examined after heat (57°C) or solar treatment of rotavirus. Only the inhibition of viral RNA synthesis positively correlated with a loss of rotavirus infectivity; 57°C treatment of rotavirus resulted in a decrease of rotavirus RNA synthesis at the same rate as rotavirus infectivity. These data suggest that heat treatment neutralized rotaviruses primarily by targeting viral transcription functions. In contrast, when using solar disinfection, the decrease in RNA synthesis was responsible for approximately one-half of the decrease in infectivity, suggesting that other mechanisms, including posttranslational, contribute to inactivation. Nevertheless, both solar and heat inactivation of rotaviruses disrupted viral RNA synthesis as a mechanism for inactivation.O f all waterborne microbes that can cause pathogenic diseases, viruses remain the most challenging for study in aquatic environments (1-4). This is for several reasons. First, compared to bacterial pathogens, viruses are more resistant to disinfection by standard water disinfection treatments (2, 5, 6). Second, for those conditions that do indeed neutralize viruses, the molecular mechanism(s) responsible for inactivation is unclear (7,8). Third, it is only recently that technologies such as quantitative PCR (qPCR) and deep genome sequencing have allowed for the detection of viral genomes in water samples (1, 4, 9, 10).Enteric viruses include rotavirus, adenovirus, coxsackievirus, and norovirus (4). Rotavirus is the leading cause of diarrhea hospitalizations for children under 5 years of age and is responsible for the deaths of an estimated 453,000 children each year (11). Despite this impact on human health, little is known as to what conditions result in the best disinfection of rotavirus in wastewater and drinking water. In addition, it is unclear how a disinfectant functions on a molecular level to inactivate rotavirus.Rotavirus is a nonenveloped virus with a double-stranded, segmented RNA genome. Six structural proteins make up the capsid, including VP4 and VP7. For rotavirus to attach to its host cell, VP4 binds to the host cell receptors, and after a multistep process involving the VP4, VP7, and other cellular proteins, rotavirus enters the host cell through endocytosis. Upon penetration, rotavirus loses its outer capsid (VP7 and VP4), and the double-layered particle is transported to the cell cytopl...