Primary ciliary dyskinesia (PCD), resulting from defects in cilia assembly or motility, is caused by mutations in a number of genes encoding axonemal proteins. PCD phenotypes are variable, and include recurrent respiratory tract infections, bronchiectasis, hydrocephaly, situs inversus, and male infertility. We generated knockout mice for the sperm-associated antigen-17 (Spag17) gene, which encodes a central pair (CP) protein present in the axonemes of cells with "9 1 2" motile cilia or flagella. The targeting of Spag17 resulted in a severe phenotype characterized by immotile nasal and tracheal cilia, reduced clearance of nasal mucus, profound respiratory distress associated with lung fluid accumulation and disruption of the alveolar epithelium, cerebral ventricular expansion consistent with emerging hydrocephalus, failure to suckle, and neonatal demise within 12 hours of birth. Ultrastructural analysis revealed the loss of one CP microtubule in approximately one quarter of tracheal cilia axonemes, an absence of a C1 microtubule projection, and other less frequent CP structural abnormalities. SPAG6 and SPAG16 (CP proteins that interact with SPAG17) were increased in tracheal tissue from SPAG17-deficient mice. We conclude that Spag17 plays a critical role in the function and structure of motile cilia, and that neonatal lethality is likely explained by impaired airway mucociliary clearance.Keywords: primary ciliary dyskinesia; axoneme; central pair; Spag17; cilia Cilia are organelles that play key roles, including the determination of left-right asymmetry in the body; clearing mucus, particles, and fluid out of the airways; and facilitating the flow of cerebrospinal fluid (CSF) (1). Primary ciliary dyskinesia (PCD), which results from defects in the formation and function of cilia and flagella, is a relatively rare disorder affecting 1 in 16,000 individuals worldwide (2). The axoneme, the highly conserved cytoskeletal structure of motile cilia, has a "9 1 2" arrangement consisting of nine outer doublet microtubules surrounding a central microtubule pair. Motility is dependent upon proteins associated with the outer doublet microtubules, including dynein arms, radial spokes, and nexin links.The sliding of the outer doublet microtubules is modulated by the central pair (CP) apparatus (2-4). The two microtubules in the CP are structurally and biochemically dimorphic, and by convention receive separate designations (e.g., C1 and C2). At least 10 different polypeptides are uniquely associated with the C1 microtubule, and seven are unique to the C2 microtubule (3-6). This biochemical and structural asymmetry is believed to have functional significance with respect to the cilia or flagellar beat and waveform (7).The mammalian sperm-associated antigen-17 protein (SPAG17) is the orthologue of Chlamydomonas reinhardtii PF6 (8), a protein located on a projection from the C1 CP microtubule in green algae (9). The PF6 protein interacts with a number of other proteins, including calmodulin, and ultimately influences the radial s...