14Nuclear transport is facilitated by the Nuclear Pore Complex (NPC) and is essential for life in 15 eukaryotes. The NPC is a long-lived and exceptionally large structure. We asked whether NPC function 16 is compromised in ageing mitotic cells. By imaging of single yeast cells during ageing, we show that 17 the abundance of several NPC components and NPC assembly factors decreases while signs of 18 misassembled NPCs appear. Consequently, nuclear permeability decreases, resulting in decreased 19 dynamics of transcription factor shuttling and increased nuclear compartmentalisation. In support that 20 declining NPC quality control is important in mitotic ageing, we find that the transport kinetics 21 observed in ageing is mimicked in an NPC assembly mutant. Additionally, the single cell life histories 22 reveal that cells that better maintain NPC function are longer lived. We conclude that assembly and 23 quality control of NPCs are major challenges for ageing mitotic cells. 24 25 48 49
Results
50The cellular abundance of specific NPC components changes in replicative ageing 51 We previously generated the first comprehensive dynamic proteome and transcriptome map during the 52 replicative lifespan of yeast (Janssens et al., 2015), and identified the NPC as one of the complexes of 53 which the stoichiometry of its components changes strongly with ageing. Indeed, the proteome and 54 transcriptome give a comprehensive image of the cellular abundance of NPC components in ageing 55 (Fig. 1c). We observe that the cellular levels of NPC components showed loss of stoichiometry during 56 replicative ageing, which were not reflected in the more stable transcriptome data ( Fig. 1c; 57 Supplementary Fig. 1a). Clearly in mitotic ageing a posttranscriptional drift of Nup levels is apparent. 58 59 3 Fig. 1: The cellular abundance of some NPC components changes in replicative ageing a, Cartoon representation of the NPC (adapted from Kim et al., 2018) illustrates different structural regions of the NPC, all FG-Nups are shown in green independently of their localization, the membrane rings in light brown, the inner rings in purple, the outer rings in brown, the mRNA export complex in pink, and the nuclear basket structure in light blue. b, Schematic presentation of replicative ageing yeast cells. c, Transcript and protein abundance of NPC components (colour coded as in Fig. 1a) as measured in whole cell extracts of yeast cells of increasing replicative age; after 68 hours of cultivation the average replicative age of the cells is 24. Cells were aged under controlled and constant conditions. Data from Janssens et al., 2015. See also Supplementary Fig. 1a. d, Young cells are trapped in the microfluidic device and bright field images are taken every 20 minutes to define the cells age and fluorescent images are taken once every 15 hours to detect the protein localization and abundance. Representative images of cells expressing indicated fluorescent protein fusions imaged at the start of the experiment and after 30 hours; the...