“…The application of an anaerobic digester prior to the hybrid subsurface flow CW present an interesting tool to avoid bed filter clogging by TSS and to enhance the treatment in terms of organic matter, nutrients but also to achieve low indicators organisms concentrations (El‐Khateeb and El‐Gohary, 2003; De Sousa et al , 2003; Barros et al , 2006; Green et al , 2006; El Hamouri et al , 2007; Ruiz et al , 2008; El‐Khateeb et al , 2009; Singh et al , 2009; Ayaz et al , 2015). The efficiency of pathogen removal in constructed wetland systems depends on a number of mechanisms including physical, chemical and biological mechanisms, alone or in combination such as mechanical filtration, temperature, pH, dissolved oxygen, design of CW, adsorption to organic matter, adhesion to biofilm, exudation, and predation… (Díaz et al , 2010; Wu et al , 2016; Alufasi et al , 2017). The objectives of this study are to investigate and evaluate: (1) the overall performance of a hybrid constructed wetland CW 2 with settler/digester, followed by a vertical subsurface flow system and an horizontal subsurface flow system vegetated with Phragmites australis connected in series (settler/digester 2 , VF‐CW 2 and HF‐CW 2 ) in rural wastewater treatment; (2) the influence of seasonal variation in CW 2 performance and (3) the mechanisms and major environmental factors relative to indicator organisms and opportunistic pathogens removal in the settler/digester 2 , in VF‐CW 2 and in HF‐CW 2 .…”