2005
DOI: 10.1152/ajpheart.01030.2004
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Mechanistic model of cardiac energy metabolism predicts localization of glycolysis to cytosolic subdomain during ischemia

Abstract: The model has three distinct domains (blood, cytosol, and mitochondria) with interdomain transport of chemical species. In addition to distinguishing between cytosol and mitochondria, the model includes a subdomain in the cytosol to account for glycolytic metabolic channeling. Myocardial ischemia was induced by a 60% reduction in coronary blood flow, and model simulations were compared with experimental data from anesthetized pigs. Simulations with a previous model without compartmentation showed a slow activa… Show more

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Cited by 64 publications
(95 citation statements)
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“…Palmitate and alanine represent the entire family of fatty acids and amino acids. The efficacy of this approach has been demonstrated in other studies (Kim et al, 2007;Zhou et al, 2005). Since the maximum rate coefficients are determined from in vivo flux data and the phenomenological M-M constants, the metabolic fluxes described by this method can be bounded within physiological limits.…”
Section: Model Specifications and Assumptionsmentioning
confidence: 91%
“…Palmitate and alanine represent the entire family of fatty acids and amino acids. The efficacy of this approach has been demonstrated in other studies (Kim et al, 2007;Zhou et al, 2005). Since the maximum rate coefficients are determined from in vivo flux data and the phenomenological M-M constants, the metabolic fluxes described by this method can be bounded within physiological limits.…”
Section: Model Specifications and Assumptionsmentioning
confidence: 91%
“…A full list and a sensitivity classification of the 147 parameters that describe the model is given in the Appendix. The discussion in this section will focus on sensitivity analysis of a few concentrations of interest, that is, those measured in [16], i.e., cytosolic glycogen and lactate, as well as of the concentrations of the key facilitators ATP, ADP, NAD + and NADH in both cytosol and mitochondria. We remark that a similar analysis can be carried out for any concentration of interest.…”
Section: Discussion Of Resultsmentioning
confidence: 99%
“…The three compartment model to which we apply our analysis, described in [1], is a modification of the one proposed in [16]. The dynamics of the species concentrations are described by a system of 46 nonlinear stiff ordinary differential equations which depend on 147 parameters.…”
Section: Model Identificationmentioning
confidence: 99%
“…The simplest example of the general multi-compartment models for cell metabolism is a twocompartment model consisting only of blood and lumped tissue compartments, see, e.g., Calvetti & Somersalo (2006) ;Calvetti et al (2006b); Salem et al (2004); Zhou et al (2005). More complex models take into account the partitioning of the cells into cytosol and organelles such as mitochondria, and may differentiate between different cell types such as neurons and astrocytes in the brain metabolism models.…”
Section: Multi-compartment Modelsmentioning
confidence: 99%
“…The transport fluxes can be modeled similarly. The rate of a carrier facilitated transport of substrate A from compartment x to compartment y is expressed on the form (6) and for passive, diffusive transport, the rate is expressed as These approximations were used earlier in the dynamic context, see Calvetti & Somersalo (2006);Calvetti et al (2006b);Salem et al (2004); Zhou et al (2005). For a justification of such approximations, we refer to the textbooks Keener & Sneyd (1998);Marangoni (2003).…”
Section: Parametric Model: Michaelis-menten Formulasmentioning
confidence: 99%