The substructure of the outer dynein arm has been analyzed in quick-frozen deepetch replicas of Tetrahymena and Chlamydornonas axonemes. Each arm is found to be composed of five morphologically discrete components: an elliptical head; two spherical feet; a slender stalk; and an interdynein linker. The feet make contact with the A microtubule of each doublet; the stalk contacts the B microtubule; the head lies between the feet and stalk; and the linker associates each arm with its neighbor. The spatial relationships between these five components are found to be distinctly different in rigor (ATP-depleted) versus relaxed (ATP-or vanadate plus ATP-treated) axonemes, and the stalk appears to alter its affinity for the B microtubule in the relaxed state. Images of living cilia attached to Tetrahymena cells show that the relaxed configuration is adopted in vivo. We relate our observations to morphological and experimental studies reported by others and propose several models that suggest how this newly described dynein morphology may relate to dynein function. Doublet microtubules of eukaryotic cilia and flagella are bridged by outer dynein arms that are presumed to play a key role in the mechanochemical generation of ciliary motility (see references 6, 16, and 54 for recent reviews). Considerable progress has been made in analyzing the polypeptide components and the ATPase activities associated with the outer arms (11,49,64), and both biochemical and morphological studies indicate that each arm must be composed of several subunits (19,49,64,70). To date, however, the number, size, and spatial relationships of these postulated subunits remain unknown, largely because the arms are poorly resolved when viewed by traditional thin section or negative-stain electron microscopy. Two factors are likely to contribute to this poor resolution: the arms may well be sensitive to such manipulations as fLxation, dehydration, and air drying; moreover, because they repeat along each doublet with a 24-nm period and span a 21-nm inter-doublet gap, there is likely to be considerable image overlap in both thin-sectioned and negatively stained preparations.The quick-freeze, deep-etch technique (24) is well suited to the study of structures such as dynein arms, since material can be examined without chemical fLxation, dehydration, or staining, and the resultant three-dimensional platinum replicas are free of image superimposition. When care is taken to examine only material that is optimally frozen, meaningful images of high resolution can be obtained.Using this technique, we have analyzed the substructure of outer dynein arms in axonemes (demembranated cilia) of Tetrahymena and Chlamydomonas. We show that each outer arm consists of five discrete structural components, and we document the distinct configurations adopted by these subunits 798 under two extreme conditions: rigor, in which the axonemes are fully depleted of ATP, and relaxation, in which the axonemes are presented with ATP plus sodium vanadate, a dynein ATPase inhibit...