To examine the relationship between genetic and physical chromosome maps, we constructed a diploid strain of the yeast Saccharomyces cerevisiae heterozygous for 12 restriction site mutations within a 23-kilobase (5-centimorgan) interval of chromosome m. Crossovers were not uniformly distributed along the chromosome, one interval containing significantly more and one interval significantly fewer crossovers than expected. One-third of these crossovers occurred within 6 kilobases of the centromere. Approximately half of the exchanges were associated with gene conversion events. The minimum length of gene conversion tracts varied from 4 base pairs to more than 12 kilobases, and these tracts were nonuniformly distributed along the chromosome. We conclude that the chromosomal sequence or structure has a dramatic effect on meiotic recombination.In general, one expects to find that the frequency of recombination between two genes should be proportional to the physical distance between the two markers. Deviations from this expectation have been observed, however, and are usually attributed to one of two factors: the proximity of chromosomal structural elements (such as the centromere) to the genetic interval, or the presence (or absence) of sequence-specific "hotspots" for recombination within the genetic interval.The clearest example of an effect of chromosome structure on recombination of adjacent sequences is the effect of the centromere on meiotic exchange in Drosophila melanogaster. The genetic map is contracted relative to the physical map at the centromere (6). Several experiments have indicated the possibility of a similar centromeric repression of meiotic exchange in fungi. First, in Aspergillus nidulans and Saccharomyces cerevisiae, there is relatively more mitotic than meiotic recombination near the centromere (23, 31). The second type of experiment concerned the physical analysis of cloned centromeric sequences of S. cerevisiae (3,8,13). Two short conserved sequences (8 and 25 base pairs [bp]) flanking an A+T-rich spacer of 70 to 100 bp are sufficient for centromere function. In some cases, the physical distance between a cloned centromere and a selectable gene was known, and therefore a correlation between genetic and physical distance near the centromere could be established. Although the ratio between centimorgans (cM) and kilobases (kb) for some of these centromeric regions was lower than the average for the genome (37), for others the ratio was about the same. A third type of experiment involved moving the centromere of yeast chromosome III to a new position within the same chromosome. In such yeast strains, Lambie and Roeder (20) found that meiotic recombination increased in an interval near the original position of the centromere, whereas recombination in the interval into which the centromere had been introduced decreased.In addition to effects of structural elements on recombination, there are sites that appear to stimulate homologous recombination locally (reviewed by Whitehouse (41]). For