Phosphorus is one of the essential mineral nutrients required by all living cells. Plants assimilate phosphate (P i ) from the soil, and their root systems encounter tremendous variation in P i concentration, both temporally and spatially. Genome sequence data indicate that plant genomes contain large numbers of genes predicted to encode P i transporters, the functions of which are largely unexplored. Here we present a comparative analysis of four very closely related P i transporters of the PHT1 family of Medicago truncatula. Based on their sequence similarity and locations in the genome, these four genes probably arose via recent gene duplication events, and they form a small subfamily within the PHT1 family. The four genes are expressed in roots with partially overlapping but distinct spatial expression patterns, responses to P i and expression during arbuscular mycorrhizal symbiosis. The proteins are located in the plasma membrane. Three members of the subfamily, MtPT1, MtPT2, and MtPT3, show low affinities for P i . MtPT5 shares 84% amino acid identity with MtPT1, MtPT2, and MtPT3 but shows a high affinity for P i with an apparent K m in yeast of 13 M. Sequence comparisons and protein modeling suggest that amino acid residues that differ substantially between MtPT5 and the other three transporters are clustered in two regions of the protein. The data provide the first clues as to amino acid residues that impact transport activity of plant P i transporter proteins.Phosphorus (P) is required by all organisms and is an essential component of cellular macromolecules, energy transfer reactions, and cellular metabolism (1). Plants acquire P as phosphate (P i ) from the soil and uptake into the roots occurs either directly through the root epidermal cells, or indirectly through arbuscular mycorrhizal (AM) 3 fungi with which most plants form symbiotic associations (2-5). Both the initial uptake and subsequent distribution of P i to cells throughout the plant require the activity of membrane transport proteins, and a combination of experimental evidence and genome sequence analyses indicate that plants contain a wide variety of P i transporter genes. Furthermore, the different P i transporter gene families are themselves composed of multiple members (2, 6). Current data suggest that members of the PHT1 P i transporter family mediate transfer of P i into cells, whereas members of the PHT2, PHT3, PHT4, and pPT families are involved in P i transfer across internal cellular membranes and organelle membranes (7-10).Members of the PHT1 P i transporter gene family have been identified from a wide range of plant species including Arabidopsis, rice, Medicago truncatula, and tomato (11)(12)(13)(14)(15)(16)(17)(18)(19)(20). Many of these transporters are expressed in roots and show elevated transcript levels during growth in low P i conditions. From the Arabidopsis and rice whole genome sequences, the full extent of the PHT1 transporter families is revealed and these species contain 9 and 13 members, respectively. Eight of the...