The a helix, a common building block of the protein secondary structure, plays an important role in determining protein structure and function. The biological function of the a helix is mainly attributed to its large macrodipole [1] originating from the alignment of individual dipole moments of peptide bonds. Preparation of directionally aligned ahelical peptide layers on substrates has attracted significant attention because the resulting strong net dipole is useful for a variety of applications in photonics, [2,3] molecular electronics, [4] and catalysis. [5][6][7] In addition, conformationally-selected a-helical peptide arrays can be used for detailed characterization of molecular recognition steps critical for protein folding, enzyme function, and DNA binding by proteins. Existing technologies for the production of a-helical peptide surfaces are based on a variety of solution-phase synthetic strategies [2,5,8] that usually require relatively large quantities of purified materials.Preparative mass spectrometry based on soft landing (SL) [9][10][11][12][13][14][15][16][17][18] of mass-selected ions is a viable alternative to the existing surface modification approaches. It has been demonstrated that SL enables highly specific preparation of uniform thin films of biological molecules on substrates. [19][20][21] In addition, reactive landing (RL), in which SL is followed by covalent linking of molecules to chemically reactive surfaces, can be used for controlled immobilization of peptides and proteins on solid supports. [22,23] Because SL is a relatively gentle ion deposition technique, it is easy to preserve the primary structure of deposited species. However, it is very difficult to control the secondary structure of soft-landed biomolecules, because electrospray ionization (ESI) utilized in these experiments generates ions in a variety of different conformations. Previous studies reported retention of the secondary and possibly tertiary structure by soft-landed proteins. [19a, 21, 22] Herein, we demonstrate that SL can be used to prepare peptides on substrates in stable conformations that do not exist in solution.This study focuses on the preparation of conformationally-selected peptide arrays using SL of mass selected peptide ions on self-assembled monolayer (SAM) surfaces. The singly protonated Ac-A 15 K peptide was selected as a model system for this study because ion mobility measurements and molecular dynamics (MD) simulations demonstrated that this peptide forms a very stable a-helical conformation in the gas phase, which is stabilized by the interaction between the protonated C-terminal lysine residue and the dipole of the helix.[24] Formation of the a-helical peptide array is demonstrated on an inert SAM of alkylthiol on gold (HSAM) and covalent immobilization of the Ac-A 15 K peptide on a reactive SAM of N-hydroxysuccinimidyl ester terminated alkylthiol on gold (NHS-SAM) with retention of the secondary structure. Because the NHS-SAM surface readily reacts with primary amino groups in proteins or pepti...