“…The analytical platforms applied for targeted metabolic profiling consisted of ultra-high-performance liquid chromatography (UHPLC) coupled to triple quadrupole mass spectrometry (UPLC-QqQMS) [ 9 , 19 ], gas-liquid chromatography [ 21 , 29 ], high-pressure liquid chromatography (HPLC) [ 21 , 23 ], nuclear magnetic resonance (NMR) spectroscopy [ 20 ], liquid chromatography with on-line tandem mass spectrometry (LC-MS/MS) [ 20 ], gas chromatography-mass spectrometry (GC-MS) [ 21 , 26 , 27 ], and a pulsed electrochemical detector [ 21 ]. The platforms for untargeted metabolic detection included gas chromatography coupled to time-of-flight mass spectrometry (GC_GC-TOFMS) [ 19 ], ultra-performance liquid chromatography coupled to quadrupole-TOFMS (UPLC-QTOFMS) [ 19 ], HPLC-MS [ 9 ], high-throughput proton NMR metabolomics [ 22 ], LC-MS [ 24 ], high-resolution proton NMR (1H NMR) spectroscopy [ 25 ], and NMR-based metabolic profiling [ 28 ]. The most used method for fecal microbiota analysis was 16S ribosomal RNA amplicon sequencing [ 20 , 22 , 24 , 27 ], and the other techniques included shotgun sequencing [ 9 , 24 ], quantitative real-time PCR [ 21 , 23 , 29 ], denaturing gradient gel electrophoresis (DGGE) [ 19 ], phylogenetic microarray [ 29 ], temperature gradient gel electrophoresis (TGGE) [ 23 ], and multi-tag pyro-sequencing [ 26 ].…”