Nonphotochemical quenching (NPQ) regulates energy conversion in photosystem II and protects plants from photoinhibition. Here we analyze NPQ capacity in a number of rice cultivars. NPQ was strongly induced under medium and high light intensities in rice leaves. Japonica cultivars generally showed higher NPQ capacities than Indica cultivars when we measured a rice core collection. We mapped NPQ regulator and identified a locus (qNPQ1-2) that seems to be responsible for the difference in NPQ capacity between Indica and Japonica. One of the two rice PsbS homologues (OsPsbS1) was found within the qNPQ1-2 region. PsbS protein was not accumulated in the leaf blade of the mutant harboring transferred DNA insertion in OsPsbS1. NPQ capacity increased as OsPsbS1 expression increased in a series of transgenic lines ectopically expressing OsPsbS1 in an Indica cultivar. Indica cultivars lack a 2.7-kb region at the point 0.4 kb upstream of the OsPsbS1 gene, suggesting evolutionary discrimination of this gene.chlorophyll fluorescence | pulse amplitude modulation | quantitative trait loci analysis | rice subclass P lants have the potential to transform absorbed light energy to chemical energy at relatively high efficiency. However, the actual efficiency is dependent on the inherent capacities of photochemistry and carbon assimilation, and environmental factors including light intensity. The sites at which light energy is absorbed are photosystem I and II (PSI and PSII), which drive photochemistry and production of chemical energy (ATP and NADPH). For PSII, energy transformation processes of chlorophyll excitation energy can be measured by the pulse amplitude modulation technique of chlorophyll fluorescence measurement (1-3).Chlorophyll deexcitation processes are divided into three groups: photochemistry (photosynthetic electron transport), basal dissipation/ non-light induced quenching (NO), and thermal dissipation, which results in nonphotochemical quenching (NPQ) of chlorophyll fluorescence. Basal dissipation consists of chlorophyll fluorescence, internal conversion, and intersystem crossing. With increasing light intensity, there is a decrease in efficiency of use of excitons in photochemistry and an increase in NPQ. More than half of absorbed energy can be lost through NPQ under high illumination (4, 5). NPQ consists of several components. These can be distinguished by the rate of induction of NPQ in the light and by the rate of its relaxation in the dark (6). The NPQ component that is rapidly induced by illumination and relaxes rapidly in the dark is called qE. qE is the energy-dependent quenching linked to the proton motive force.Photoinhibition indicates light stress and, under high illumination, excessive energy results in photodamage with inactivation of the PSII machinery. This leads to a decrease in the photochemical rate constant and thermal loss of energy caused by photoinhibition. Photoinhibition results in inactivation of a part of the PSII reaction centers. The degree of photoinhibition and the intrinsic loss of...