Consequences of Microbial Interactions With Hydrocarbons, Oils, and Lipids: Production of Fuels and Chemicals 2016
DOI: 10.1007/978-3-319-31421-1_216-1
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Metagenomic Mining of Enzyme Diversity

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(2 citation statements)
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“…Subsequent analysis using sequence data exploration platforms such as those offered by the Joint Genome Institute [ 74 ] and functional prediction software such as HMMER [ 75 ] are utilised to mine for known motifs and predict putative protein function based on sequence homology. However, sequence homology-based approaches are limited to identifying known motifs, and therefore they cannot identify novel activity types [ 76 ].…”
Section: Discovery Of Extremophilic Enzymes For Polyester Recyclingmentioning
confidence: 99%
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“…Subsequent analysis using sequence data exploration platforms such as those offered by the Joint Genome Institute [ 74 ] and functional prediction software such as HMMER [ 75 ] are utilised to mine for known motifs and predict putative protein function based on sequence homology. However, sequence homology-based approaches are limited to identifying known motifs, and therefore they cannot identify novel activity types [ 76 ].…”
Section: Discovery Of Extremophilic Enzymes For Polyester Recyclingmentioning
confidence: 99%
“…This approach was used by many groups with great success leading to a trove of enzyme discoveries [ 51 , 87 , 90–93 ]. There are certain limitations to this approach, including a narrow range of hosts, suboptimal protein expression, and reliance on general substrates [ 76 , 94 ]; moreover, the only recent development of metagenome screens directly assaying for plastic biodegradation activity [ 95 ] means that more time will be required for such screens to uncover novel classes of polymer-degrading enzymes.…”
Section: Discovery Of Extremophilic Enzymes For Polyester Recyclingmentioning
confidence: 99%