The separation and recycling of effective resources in Fischer-Tropsch wax residue (FTWR) are urgent because of the environmental hazards and energy waste they bring. In this study, organic solvents are used to separate recyclable resources from FTWR efficiently, achieving the goals of “Energy Recycle” and “Fisher-Tropsch Wax Residue Treatment”. The response surface methodology (RSM) response surface analysis model accurately evaluates the relationship among temperature, residence time, liquid–solid ratio, and desorption rate and obtains the best process parameters. The results show that the product yield can reach 82.28% under the conditions of 80 °C, 4 h, and the liquid–solid ratio of 24.4 mL/g. Through the kinetic analysis of the desorption process of FTWR, the results show that the desorption process conforms to the pseudo second-order kinetic model and the internal diffusion model. The thermodynamic function results showed that there were not only van der Waals forces in the desorption process, but other strong interaction forces such as hydrogen bonds. In addition, Langmuir, Freundlich, and BET equations are used to describe the desorption equilibrium. Scanning electron microscopy (SEM) were used to analyze the pore structure of FTWR during desorption. X-ray diffraction (XRD), Fourier transform infrared spectroscopy (FT-IR), and Gas chromatography-mass spectrometer (GC-MS) analysis confirmed that the desorption product’s main component was hydrocarbons (50.38 wt%). Furthermore, naphthenic (22.95 wt%), primary alcohol (11.62 wt%), esters (8.7 wt%), and aromatic hydrocarbons (6.35 wt%) compounds were found and can be further purified and applied to other industrial fields. This study shows that using petroleum ether to separate and recover clean resources from Fischer-Tropsch wax residue is feasible and efficient and has potential industrial application prospects.