Metformin serves an important role in improving the functions of endothelial progenitor cells (EPcs). MicroRNAs (miRNAs), small non-coding RNAs, have been investigated as significant regulators of EPC vascular functions. The present study investigated the molecular crosstalk between metformin and miRNA-130a (miR-130a) in the functions of EPcs exposed to palmitic acid (PA). Isolated EPcs were treated with metformin, PA, and metformin + PA, respectively. cell counting Kit-8, Transwell and Matrigel assays were performed to detect the proliferation, migration and tube formation ability of EPcs following different treatments. The expression of miR-130a, phosphatase and tensin homolog (PTEN) and phosphorylated-AKT was analyzed by reverse transcription-quantitative polymerase chain reaction and western blotting. The specific mechanism underlying the function of metformin in EPcs was further elucidated by transfecting miR-130a mimics and inhibitor to overexpress and inhibit the expression of miR-130a in EPcs, respectively. EPcs exhibited impaired functions of proliferation (P<0.01 compared with the control), migration (P<0.01 compared with the control) and tube formation (P<0.01 compared with the control) following treatment with PA, and the expression levels of miR-130a and PTEN were decreased and increased, respectively. However, the presence of metformin, or the overexpression of miR-130a using miR-130a mimic alleviated the impairment of angiogenesis and proliferation, decreased the expression of PTEN and activated the phosphoinositide-3 kinase/AKT pathway in EPcs exposed to PA. By contrast, downregulating the expression of miR-130a with a miR-130a inhibitor reversed the metformin-mediated protection. These results demonstrate the beneficial effect of miR-130a/PTEN on EPc functions, which can be regulated by metformin. The effects of metformin on improving PA-induced EPc dysfunction are mediated by miR-130a and PTEN, which may assist in the prevention and/or treatment of diabetic vascular disease.