For the first time, the pW8-3C construct encoding the artificial tumor-specific protein W8-3C with the addition of 3 residues of free Cys at the C end was created and described. Using purified W8-3C protein, dispersions of nanoparticles 75.24 nm in diameter at polydispersity index (Pdi) of 0.064 and Se content of 1566 µg/mL were obtained and characterized for the first time. The dispersions remained stable upon storage for 6 months at +4°C. For comparison, the maximum Se content in the nanoparticle dispersion obtained in the presence of W8-3C protein and Pluronic F-127 was 399 µg/ml. The cytotoxic activity of the obtained nanoparticles was studied on transplanted cells of human tumor lines: HeLa (cervical carcinoma), U-87 MG (glioblastoma), MCF-7 (breast carcinoma) and HCT-116 (colon carcinoma) and compared with that on the diploid human fibroblast line WI-38 in vitro. It was shown that the IC50 of Se nanoparticles obtained using the W8-3C protein for tumor lines ranged from 5.25 to 8.37 µg/ml, while the IC50 for normal fibroblasts was 14.3 µg/ml (difference in values by a factor of 1.7–2.7 times).