Three small-pore silicoaluminophosphates containing relatively large cavities in their structure (LEV, LTA and SAV) have been hydrothermally synthesized with various silicon concentrations. The effect of the silicon content and distribution on both the physicochemical and the catalytic properties of the SAPO molecular sieves was studied. Remarkable differences in the Si incorporation were found, showing that the topological features and the structure directing agent employed in each case play an important role, controlling not just the Si location in the framework, but also the amount of Si incorporated. In all the cases, the formation of Si islands, associated to stronger acid sites, was favoured by the use of higher concentrations of the Si source in the synthesis gel. However, it has been found that framework topology can have greater influence than acidity on the catalytic behaviour of SAPO materials in the MTO transformation.