Survival of yeast during starvation has been shown to depend on the nature of the missing nutrient(s). In general, starvation for "natural" nutrients such as sources of carbon, phosphate, nitrogen, or sulfate results in low death rates, whereas starvation for amino acids or other metabolites in auxotrophic mutants results in rapid loss of viability. Here we characterized phenotype, gene expression, and metabolite abundance during starvation for methionine. Some methionine auxotrophs (those with blocks in the biosynthetic pathway) respond to methionine starvation like yeast starving for natural nutrients such as phosphate or sulfate: they undergo a uniform cell cycle arrest, conserve glucose, and survive. In contrast, methionine auxotrophs with defects in the transcription factors Met31p and Met32p respond poorly, like other auxotrophs. We combined physiological and gene expression data from a variety of nutrient starvations (in both respiratory competent and incompetent cells) to show that successful starvation response is correlated with expression of genes encoding oxidative stress response and nonrespiratory mitochondrial functions, but not respiration per se.U nderstanding global coordination of subcellular processes during adaptation to environmental change is a central challenge in systems biology. The ability of free-living organisms to adapt to changes in their nutritional environment is clearly one of the driving forces of their evolution. In natural environments, yeast are exposed to extreme variations in "natural nutrient" availability, particularly in their sources of carbon (and energy), phosphorus, sulfur, and nitrogen. Unlike wild type strains, auxotrophic mutant yeast strains unable to make an essential metabolite (e.g., leucine or uracil) can also be starved for the missing metabolite, but adaptation to this kind of "nonnatural" starvation has not been subject to evolutionary selection. Starvation of Saccharomyces cerevisiae for a single, growth-limiting nutrient offers the opportunity to study the coordination of nutrient sensing, metabolism, growth, and cell division. Proper coordination results in prolonged survival, concerted cell cycle arrest, and glucose conservation during starvation, and depends strongly on the specific nutrient being depleted. For instance, the survival of auxotrophic yeast starved for leucine, histidine, or uracil is substantially impaired (exhibiting a roughly 10-fold difference in half-life) relative to the same strain starved for the "natural" nutrients sulfate or phosphate (1). Starvation for sulfate or phosphate elicits rapid, nearly uniform G0/G1 cell cycle arrest and slows glucose consumption, whereas starvation for leucine, histidine, or uracil results in incomplete cell cycle arrest and markedly higher rates of glucose consumption.We are interested in understanding what, if any, general principles determine starvation phenotype. Early work on nutrient starvation posited the existence of a starvation "signal" that promotes concerted cell cycle arrest and surviv...