We describe an efficient procedure, which uses monoclonal antibodies directed against specific viral proteins, for the precise mapping of genes on large DNA virus genomes. We have used the technique to locate the gene encoding a family of antigenicaily related DNA-binding proteins on the 240-kilobase-pair human cytomegalovirus (CMV) genome. A random library of CMV DNA fragments was generated using the prokaryotic vector Xgtll, which expresses open reading frames as ,-galactosidase fusion proteins in infected Escherichia coli. The library was screened with a mixture of monoclonal antibodies directed against the gene products of interest. The coding sequence for infected cell protein 36 (ICP36) was localized to a 2800-base-pair EcoRI fragment (map coordinates 0.228-0.240) on the CMV(Towne) and CMV(AD169) genomes by using DNA from immunoreactive Xgtll as probe. A 5000-nucleotide transcript from this region was detected during the early and late phases of the CMV growth cycle. This transcript directed the synthesis of the predominant member of the ICP36 family when hybrid-selected and translated in vitro. Immunoprecipitation of the in vitro translation product with the same monoclonal antibodies used in the initial mapping confirmed the location of the ICP36 gene. These studies establish the utility of the Agtll expression system for rapid and precise mapping of CMV genes (or other large animal virus genes) that encode proteins for which serological reagents exist.Human cytomegalovirus (CMV), a herpesvirus carried by most of the population, causes disease in infants and immunocompromised adults. CMV has a large DNA genome of -240 kilobase pairs (kbp) on which few viral genes have been precisely localized (1-4). Even less is known concerning the functional organization of the viral genome. Studies on the temporal expression of viral proteins and mRNA transcripts (4-11) have suggested that, as for herpes simplex virus (12), CMV gene expression is coordinately regulated and sequentially ordered; however, viral regulatory functions have not been identified. Major obstacles to locating viral genes have been (i) the large size of the CMV genome, (ii) the slow growth of the virus in cell culture, (iii) the continued synthesis of host proteins during infection, (iv) the lack of viral mutants, and (v) a host range limited to human fibroblast cells. We have modified the recently described procedures for cloning in the prokaryotic expression vector Xgtll (13,14), thereby establishing a system using serological reagents for rapid and precise mapping of viral gene products.We constructed a Xgtll library of randomly generated 400-to 500-base-pair (bp) CMV DNA fragments and probed this library with monoclonal antibodies to isolate clones expressing portions of viral proteins as f3-galactosidase fusion proteins. DNAs from immunoreactive phage were used as hybridization probes for precise localization of the coding sequences on the CMV genome.We used two monoclonal antibodies isolated by Pereira et al. (15) to map a major DN...