Abstract:ARUZ is a large scale, massively parallel, FPGA-based reconfigurable computational system dedicated primarily to molecular analysis. This paper presents a methodology for ARUZ firmware development that simplifies the process, offers low-level optimization, and facilitates verification. According to this methodology, firstly an expanded, generic, all-in-one VHDL description of variable Processing Elements (PEs) is developed manually. GCC preprocessing is then used to extract only the desired target functionalit… Show more
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