autophagy and the ubiquitin proteasome system (uPS) are two major protein degradation pathways involved in brain ischemia. autophagy can compensate for uPS impairment-induced cellular dysfunction. HecT, uBa and WWe domain containing e3 ubiquitin protein ligase 1 (Huwe1), an e3 ubiquitin ligase, serves critical roles in nervous system plasticity, regeneration and disease. However, the role of Huwe1 in autophagy in brain ischemia/reperfusion (i/r) injury remains unknown. The aim of the present study was to investigate the crosstalk between autophagy and the uPS in brain ischemia. The present study established an oxygen-glucose deprivation and reperfusion (oGd/r) model in rat primary cortex neurons in vitro. lentiviral interference was used to silence the expression of Huwe1. an autophagy promoter (rapamycin), an autophagy inhibitor (wortmannin) and a JnK pathway inhibitor (SP600125) were also used in the current study. cellular autophagy-related proteins, including Beclin-1, autophagy related (aTG) 7, aTG5, aTG3 and microtubule associated protein 1 light chain 3 α, and apoptosis-related proteins, such as P53, cleaved caspase 3, Bax and Bcl2, were detected via western blotting and immunocytochemistry. neuronal apoptosis was evaluated using a Tunel assay. The results demonstrated that silencing Huwe1 increased the expression levels of autophagy-related proteins at 24 h after oGd/r. Treatment with a JnK inhibitor or cotreatment with Huwe1 shRNA significantly increased autophagy. rapamycin increased apoptosis under oGd/r conditions. However, treatment with Huwe1 shrna decreased the number of Tunel-positive cells at 24 h after oGd/r. cotreatment with Huwe1 shrna and wortmannin alleviated neuronal apoptosis under oGd/r conditions compared with cotreatment with dMSo. collectively, the present results suggested that silencing Huwe1 was accompanied by a compensatory induction of autophagy under oGd/r conditions. Furthermore, the JnK pathway may be a key mediator of the interaction between Huwe1 and autophagy in response to uPS impairment.