This paper presents a numerical simulation of a magneto-convection flow in a 3D chamber. The room has a very specific permeability and a zigzag bottom wall. The fluid used in this study is Al2O3-Cu/water with 4% nanoparticles. The Galerkin finite element technique (GFEM) was developed to solve the main partial equations. The hybrid nanofluid inside the container is subjected to the horizontal motion of the upper wall, an external magnetic field, and a thermal buoyancy force. The present numerical methodology is validated by previous data. The goal of this investigation was to understand and determine the percentage of heat energy transferred between the nanofluid and the bottom wall of the container under the influence of a set of criteria, namely: the movement speed of the upper wall of the cavity (Re = 1 to 500), the amount of permeability (Da = 10−5 to 10−2), the intensity of the external magnetic field (Ha = 0 to 100), the number of zigzags of the lower wall (N = 1 to 4), and the value of thermal buoyancy when the force is constant (Gr = 1000). The contours of the total entropy generation, isotherm, and streamline are represented in order to explain the fluid motion and thermal pattern. It was found that the heat transfer is significant when (N = 4), where the natural convection is dominant and (N = 2), and the forced convection is predominant.