The distances between the inositol 1,4,5-trisphosphate (IP 3 )-binding sites of tetrameric IP 3 receptors were probed using dimers of IP 3 linked by poly(ethylene glycol) (PEG) molecules of differing lengths (1-8 nm). Each of the dimers potently stimulated 45 Ca 2؉ release from permeabilized cells expressing predominantly type 1 (SH-SY5Y cells) or type 2 (hepatocytes) IP 3 receptors. The shortest dimers, with PEG linkers of an effective length of 1.5 nm or less, were the most potent, being 3-4-fold more potent than IP 3 . In radioligand binding experiments using cerebellar membranes, the shortest dimers bound with highest affinity, although the longest dimer (8 nm) also bound with almost 4-fold greater affinity than IP 3 . The affinity of monomeric IP 3 with only the PEG attached was 2-fold weaker than IP 3 , confirming that the increased affinity of the dimers requires the presence of both IP 3 motifs. The increased affinity of the long dimer probably results from the linked IP 3 molecules binding to sites on different receptors, because the dimer bound with greater affinity than IP 3 to cerebellar membranes, where receptors are densely packed, but with the same affinity as IP 3 to purified receptors. IP 3 and the IP 3 dimers, irrespective of their length, bound with similar affinity to a monomeric IP 3 -binding domain of the type 1 IP 3 receptor expressed in bacteria. Short dimers therefore bind with increased affinity only when the receptor is tetrameric. We conclude that the four IP 3 -binding sites of an IP 3 receptor may be separated by as little as 1.5 nm and are therefore likely to be placed centrally in this large (25 ؋ 25 nm) structure, consistent with previous work indicating a close association between the central pore and the IP 3 -binding sites of the IP 3 receptor.Inositol 1,4,5-trisphosphate (IP 3 ) 1 receptors are intracellular Ca 2ϩ channels that are expressed in many cells and that mediate the release of Ca 2ϩ from intracellular stores evoked by receptors that stimulate IP 3 formation. The three subtypes of mammalian IP 3 receptor are closely related to each other and to the receptors expressed in birds, Xenopus, crayfish, Drosophila and Caenorhabditis elegans (2). For each of these receptors, the functional IP 3 -gated Ca 2ϩ channel is thought to be a tetramer, which may either be homomeric or, in those species that express more than one receptor subtype, heteromeric (3). Although the different subtypes of mammalian IP 3 receptor differ in their distribution (2), differ modestly in their affinity for IP 3 and their ability to recognize different inositol phosphates (4), and may be differentially modulated (5), the physiological significance of this diversity is unclear. More striking than the differences between IP 3 receptor subtypes are the similarities: the primary sequences of the subunits are closely related, each assembles to form a tetrameric IP 3 -gated Ca 2ϩ channel, they recognize similar ligands with broadly similar affinities, and most are biphasically regulated by cytosolic Ca 2...