Intracellular bacteria have been observed in various species of ¢larial nematodes (family Onchocercidae). The intracellular bacterium of the canine ¢laria Diro¢laria immitis has been shown to be closely related to Wolbachia, a rickettsia-like micro-organism that is widespread among arthropods. However, the relationships between endosymbionts of di¡erent ¢lariae, and between these and the arthropod wolbachiae, appear not to have been studied. To address these issues we have examined ten species of ¢larial nematodes for the presence of Wolbachia. For nine species, all samples examined were PCR positive using primers speci¢c for the ftsZ gene of Wolbachia. For one species, the examined samples were PCR negative. Sequences of the ampli¢ed ftsZ gene fragments of ¢larial wolbachiae fall into two clusters (C and D), which are distinct from the A and B clusters recognized for arthropod wolbachiae. These four lineages (A^D) are related in a star-like phylogeny, with higher nucleotide divergence observed between C and D wolbachiae than that observed between A and B wolbachiae. In addition, within each of the two lineages of ¢larial wolbachiae, the phylogeny of the symbionts is consistent with the host phylogeny. Thus, there is no evidence for recent Wolbachia transmission between arthropods and nematodes. Endosymbiont 16S ribosomal DNA sequences from a subset of ¢larial species support these ¢ndings.