Actinobacteria
are important cave inhabitants, but knowledge of how anthropization and anthropization‐related visual marks affect this community on cave walls is lacking. We compared
Actinobacteria
communities among four French limestone caves (Mouflon, Reille, Rouffignac, and Lascaux) ranging from pristine to anthropized, and within Lascaux Cave between marked (wall visual marks) and unmarked areas in different rooms (Sas‐1, Passage, Apse, and Diaclase). In addition to the 16S rRNA gene marker, 441 bp fragments of the
hsp
65 gene were used and an
hsp
65‐related taxonomic database was constructed for the identification of
Actinobacteria
to the species level by Illumina‐MiSeq analysis. The
hsp
65 marker revealed higher resolution for species and higher richness (99% operational taxonomic units cutoff) versus the 16S rRNA gene; however, more taxa were identified at higher taxonomic ranks.
Actinobacteria
communities varied between Mouflon and Reille caves (both pristine), and Rouffignac and Lascaux (both anthropized). Rouffignac displayed high diversity of
Nocardia
, suggesting human inputs, and Lascaux exhibited high
Mycobacterium
relative abundance, whereas Gaiellales were typical in pristine caves and the Diaclase (least affected area of Lascaux Cave). Within Lascaux, Pseudonocardiaceae dominated on unmarked walls and Streptomycetaceae (especially
Streptomyces mirabilis
) on marked walls, indicating a possible role in mark formation. A new taxonomic database was developed. Although not all
Actinobacteria
species were represented, the use of the
hsp
65 marker enabled species‐level variations of the
Actinobacteria
community to be documented based on the extent of anthropogenic pressure. This approach proved effective when comparing different limestone caves or specific conditions within one cave.