“…The copyright holder for this preprint this version posted February 26, 2022. ; https://doi.org/10.1101/2022.02.25.481906 doi: bioRxiv preprint by a pathogenic infection (or an ecological stressor) may even increase susceptibility of a host to disease (Boutin, Bernatchez, Audet, & Derome, 2013;Gustin, Cromarty, Schifanella, & Klatt, 2021;Hinderfeld & Simoes-Barbosa, 2020). Hence, an understanding of host-associated microbial community changes in response to infectious disease epidemics has implications in wildlife disease management in both terrestrial (Allender, Baker, Britton, & Kent, 2018;Denman et al, 2018;Woodhams et al, 2014) and aquatic (Luter et al, 2017;Meyer et al, 2019;Quintanilla et al, 2018;Vezzulli, Pezzati, Huete-Stauffer, Pruzzo, & Cerrano, 2013)} systems.…”