Thermal denaturation studies as a function of pH were carried out on wild-type iso-I-cytochrome c and three variants of this protein at the solvent-exposed position 73 of the sequence. By examining the enthalpy and T, at various pH values, the heat capacity increment (AC,,), which is dominated by the degree of change in nonpolar hydration upon protein unfolding, was found for the wild type where lysine 73 is normally present and for three variants. Both the m-value and AC,, are related to the change in solvent exposure upon unfolding and other investigators have shown a correlation exists between these two parameters. However, for this subset of variants of iso-I-cytochrome c, a lack of correlation exists which implies that there may be basic differences between the guanidine hydrochloride and thermal denaturations of this protein. Spectroscopic data are consistent with different denatured states for thermal and guanidine hydrochloride unfolding. The different response of rn-values and ACp for these variants will be discussed in this context. Keywords: circular dichroism; guanidine hydrochloride denaturation; heat capacity increment; iso-1 -cytochrome c; m-values; protein stability; thermal denaturation Understanding the factors that control the equilibrium between the native and denatured state of a protein is of great importance to elucidating the protein folding problem (Dill, 1990;Matthews, 1993; Shortle, 1995). Early work from Tanford's lab (Tanford, 1968) suggested that most denatured states approach a random coil, and therefore much research has focused on how native state interactions stabilize a folded protein (Privalov & Gill, 1988;Matthews, 1993). More recently it has become apparent that denatured states of proteins may be more complex than originally suspected Reprint requests to: Bruce E. Bowler, Department of Chemistry and Biochemistry, University of Denver, 2050 E. Iliff Street, Denver, Colorado 80208-2436; e-mail: bbowler@du.edu.'Present address: NIAID, National Institutes of Health, Rocky Mountain Laboratories, Hamilton, Montana 59840.Abbreviations: gdnHC1, guanidine hydrochloride; AG." "*O, free energy of unfolding in the absence of denaturant; rn-value, the rate of change of AG." as a function of guanidine hydrochloride concentration; ACp, heat capacity increment of protein unfolding; AASA, change in accessible surface area upon unfolding; WT, wild type; T,,,, midpoint temperature of unfolding; AH,,,, enthalpy of unfolding at T,; AS, , entropy of unfolding at T , ; AGD,T, free energy of unfolding at temperature, T; AH,.,, enthalpy of unfolding at temperature, T; ASDJ, entropy of unfolding at temperature, T.