Detection of molecules can be approached using an intrinsic property such as e.g., electroactivity, absorbance or fluorescence. In the case of molecules without groups providing these properties, derivatization with a marker allows their detection. Procedures for labeling molecules with chromophores and fluorophores are commonly found in the bibliography [1] but when electroactivity is concerned, examples are scarce. Miniaturized electrochemical sensors and platforms are gaining interest for decentralized analysis and innovative approaches, not only for analytical tools [2,3] but also for instrumentation [4], are being continuously developed.Although some electroactive labels have been studied, especially for selective purposes, either biosensors [5] or separation methodologies [6], more research is needed in order to study possible new markers and establish labeling procedures for developing promising analytical methodologies. Ferrocene, in the form of monocarboxylic acid (FCA) has been employed as mediator of electron transfer reactions, usually as modif ier of the working electrode [7] or more scarcely, as covalent electrochemical label of biomolecules such as e.g., antibodies [8], DNA [9], peptide nucleic acids [10,11] or aptamers [12]. In this context, it is of paramount relevance to have techniques that allow monitoring the bioconjugation process. Then, measurement of the label, either free or conjugated to biomolecules, is required in many cases for following the bioconjugation procedure of for indirect determination of analytes [13].Electrophoresis is a powerful separation technique of biomolecules that is being increasingly adapted to the microchip format (microchip electrophoresis, ME). This is mainly due to recent developments not only in materials [14] but also in surface modifications [15,16] as well as in detection systems and associated instrumentation [17,18]. Different detection principles have been integrated with MEs [19,20]. Electrochemical (EC) detection schemes [21][22][23][24] are gaining acceptance and maturity, mainly due to their high sensitivity, ease of application and possibility of electrode integration into the chip during the fabrication process, leading to fully integrated microfluidic systems [25][26][27].Currently, polymeric MEs have displaced the more traditional glass devices [17], due to a lower cost of materials and simplicity of fabrication techniques. A wide range of polymeric substrates with different fabrication protocols is reported in the literature [28][29][30]. The photoresist EPON SU-8 (SU-8), a negative tone epoxy photopatternable resist, mechanically reliable, optically transparent, chemically resistant and hydrophilic, has been used to fabricate ME devices [18,24,31]. The electroosmotic flow (EOF) in SU-8 is very similar to glass and it does not require any modification to be used with proteins and peptides since no adsorption of biomolecules on the microchannels occurs [32]. In the normal electrophoresis mode, where the microchannel wall is negatively charged, a...