We derive an expression for the magnetic blackbody shift of hyperfine transitions such as the cesium primary reference transition which defines the second. The shift is found to be a complicated function of temperature, and has a T 2 dependence only in the high-temperature limit. We also calculate the shift of ground-state p1 /2 hyperfine transitions which have been proposed as new atomic clock transitions. In this case interaction with the p3 /2 fine-structure multiplet may be the dominant effect.PACS numbers: 06.20.fb,32.60.+i The frequency of the ground-state hyperfine transitions used in atomic clocks (such as the cesium primary standard) are known to be temperature dependent [1]. For this reason the SI second is defined at 0 K, and at any finite temperature the blackbody shift must be taken into account. Temperature fluctuation of the laboratory is a major portion of the clock error budget [2], therefore the NIST-F2 cesium fountain, currently under construction, will be cooled to 77 K to reduce the blackbody shift.Recently there was some disagreement in the literature over the size of the electric blackbody radiation shift in cesium. Early measurements and ab initio calculations support a value about 10% higher than later measurements and semiempirical calculations (see [3] for references). On the theory side, this seems to have been resolved [3,4,5] in favour of the larger values. As the temperature of the experiment is reduced in the future the magnetic blackbody shift (∼ T 2 ) will become more important relative to the electric shift (∼ T 4 ). Hence this reassessment of the magnetic blackbody shift.In this paper we present a derivation of the magnetic blackbody shift of ground-state hyperfine transitions that is valid at all temperatures (not just in the high-temperature limit). We calculate the effect for s1 /2 hyperfine transitions such as the 6s1 /2 (F = 3 → 4) 133 Cs transition which defines the second (there are many other such clocks, including 87 Rb, 171 Yb + , and 199 Hg + ). We find that the simple scaling law of the blackbody shift ∆ω hfs ∼ T 2 is only valid at high temperatures. Additionally we calculate the shift for p1 /2 hyperfine transitions which have been proposed as clock references [6]. We show that interaction with the p3 /2 fine-structure multiplet must be considered.The magnitude of the magnetic blackbody field is (atomic unitsh = e = m e = 1)An oscillating magnetic field B(ω) cos(ωt) affects an atomic energy level via the time dependent perturbationwhere µ is the magnetic dipole moment of the system. The energy is affected in the second order of perturbation theory (see, e.g. [7])For an atom with a single electron above closed shells µ = −µ B (L + g s S) with g s = 2 and µ B = α/2 in atomic units. A general expression for this case is presented in the Appendix. We first examine the case of a single s1 /2 orbital split by the hyperfine interaction with a nuclear spin I. In this case there are only two levels of interest, with F = I + 1 /2 and F = I − 1 /2; the next level will be ...