The Raf/MEK/ERK (MAPK) signal transduction cascade is an important mediator of a number of cellular fates including growth, proliferation and survival. The BRAF gene is activated by oncogenic Ras, leading to cooperative effects in cells responding to growth factor signals. Our study was performed to elucidate a possible function of BRAF in ulcerative colitis (UC)-related colorectal carcinogenesis. Mutations of BRAF and KRAS were determined in 33 UC-related colorectal cancers by direct DNA sequencing analyses after microdissection. Mismatch-repair deficiency was assessed by immunohistochemistry for major mismatch-repair proteins hMLH1, hMSH2 and hMSH6 and microsatellite analyses of the BAT25 and BAT26 loci. Hypermethylation of the hMLH1 promoter was also tested. The results obtained were correlated with histopathologic variables. Activating BRAF missense mutations were identified in 3/33 UC-related cancers (9%), 2 of which exhibited a loss of hMLH1-protein expression and hypermethylation of the hMLH1 promoter. Corresponding nondysplastic UC-mucosa of these patients did not show BRAF mutations. KRAS mutations were found in 6/33 (18%) UC cancers. All 6 UC cancers with KRAS mutations had an intact BRAF gene as the 3 cancers with BRAF mutations had an intact KRAS gene. There was no significant correlation between BRAF or KRAS status and clinicopathologic variables. Our data indicate that BRAF mutations are not an initiating event in UC-related carcinogenesis and are associated with mismatch-repair deficiency through hMLH1-promoter hypermethylation. Disruption of the Raf/MEK/ERK (MAPK) kinase pathway-either through RAS or BRAF mutation-was detected in 27% of all UC-related cancers and thus plays an important role in UC-related carcinogenesis. ' 2005 Wiley-Liss, Inc.Key words: ulcerative colitis; colorectal cancer; BRAF; KRAS; histopathology Patients with longstanding ulcerative colitis have an increased risk of developing colorectal cancer compared to an age-matched control group. The risk of developing colorectal neoplasia increases with the duration and the extent of disease.1,2 Like sporadic colorectal cancer, 3 UC-related cancer is thought to evolve through a multistep process of increasing genomic instability, accumulation of mutations and clonal expansion. Although UC-related and sporadic colorectal cancers share a common set of genomic alterations, UC-related carcinogenesis appears to differ from sporadic colorectal carcinogenesis by different frequencies of specific aberrations and by different times of onset of these alterations. 4,5 Since the discovery of the role of RAS oncogenes in tumorigenesis, we have witnessed an explosion of research in the signal transduction area.6,7 A key RAS effector pathway involves the kinase cascade RAF/MEK/ERK. In the quest to understand how RAS transmits extracellular growth signals, the MAP kinase (MAPK) pathway has emerged as an important route between membranebound RAS and the nucleus. [8][9][10] Signalling through the MAPK cascade is transduced by GTP loading of RAS leadi...