Microsatellite Polymorphism and the Population Structure of the Black Tiger Shrimp (Penaeus monodon) in Thailand

Supungul, Premruethai; Sootanan, P.; Klinbunga, Sirawut; Kamonrat, Wongpathom; Jarayabhand, Padermsak; Tassanakajon, Anchalee

doi:10.1007/s101260000012

Cited by 59 publications

(25 citation statements)

References 22 publications

Supporting

Mentioning

Contrasting

Unclassified

Order By: Relevance

“…The genetic diversity of Aristeus antennatus populations was high both for the numbers of alleles (mean 13.5 alleles per locus) and for the heterozygosities: the mean observed heterozygosity over all loci was 0.65, less than the 0.80 mean value for the unbiased expected heterozygosity. These diversity parameters were in the range of those reported for other Penaeoidea species analyzed with microsatellites (Brooker et al 2000;Supungul et al 2000;Xu et al 2001;Maggioni et al 2003;Ward et al 2006;Borrell et al 2007;Li et al 2007;Robainas-Barcia et al 2008;You et al 2008;Meng et al 2009). The average heterozygosity levels of microsatellite data for A. antennatus were about 10 times higher than those obtained in previous studies with allozyme data; in fact, the expected heterozygosity ranged from 0.077 to 0.095 in A. antennatus populations from Sardinia and Sicily (Marchi et al 1995) and even lower values were found in red and blue shrimps from several localities both in the Atlantic and Western Mediterranean, where He ranged from 0.043 to 0.066 (Sardà et al 1998).…”

Section: Discussionsupporting

confidence: 75%

Genetic variability of the blue and red shrimp Aristeus antennatus in the Western Mediterranean Sea inferred by DNA microsatellite loci

et al. 2011

View full text Add to dashboard Cite

Genetic variation at eight microsatellite loci was studied in nine populations of the blue and red shrimp Aristeus antennatus to investigate whether distinct stocks are present in the Western Mediterranean Sea. A high level of gene flow and no evidence of genetic partitioning were discovered. No significant variation was found (FST = 0.00673, P‐value = 0.067) even when shrimps from exploited and those from deep‐water unexploited grounds were compared. No evidence of reduction or expansion of population size in the recent past was found, as indicated by the bottleneck and interlocus g‐tests. Our results are consistent with previous studies using mitochondrial gene methods and allozymes, indicating that, for this species, extensive pelagic larval dispersal and adult migration are probably responsible for the genetic homogeneity observed. In particular, due to a different bathymetric distribution of males and females, reported to be associated with different water masses and hence with possible differential dispersal capacity between sexes, the hypothesis of sex‐biased dispersal was tested. Mean values of corrected assignment indices and mean relatedness values were higher for males, suggesting that females are the more widely dispersing sex. Molecular assessment of A. antennatus from the Western Mediterranean provides data of biological and evolutionary interest for the successful management of such a highly valuable fishery resource.

show abstract

Section: Discussionsupporting

confidence: 75%

Genetic variability of the blue and red shrimp Aristeus antennatus in the Western Mediterranean Sea inferred by DNA microsatellite loci

et al. 2011

View full text Add to dashboard Cite

show abstract

“…Nevertheless, a significant genetic variation between populations of P. monodon from Indonesia and Australia was detected (Benzie et al., 1992; Sugama et al., 2002). However, inclusion of more variable nuclear markers such as mtDNA (Benzie et al., 1993), RAPD (Klinbunga et al., 1998, 1999; Tassanakajon et al., 1998a) or microsatellites (Supungul et al., 2000; Xu et al., 2001) presented contrasting results. Our study also revealed significant genetic differentiation in P. monodon in coastal Chinese waters, supported by the amova results.…”

Section: Discussionmentioning

confidence: 99%

“…Even though there are few studies about genetic structure of wild P. monodon in China, there have been extensive studies of genetic structure of wild P. monodom in Australia and SE Asia (Benzie et al., 1992, 1993; Klinbunga et al., 1998, 1999; Sugama et al., 2002). Alhough some analyses of genetic diversity using allozymes indicated a low level of genetic diversity (Mulley and Latter, 1980; Benzie et al., 1992, 1993; Sugama et al., 2002), the analysis of mitochondrial RFLP polymorphisms (Klinbunga et al., 1998, 1999; Benzie et al., 2002), randomly amplified polymorphic DNA (Tassanakajon et al., 1997, 1998a) and microsatellites (Tassanakajon et al., 1998b; Brooker et al., 2000; Supungul et al., 2000; Xu et al., 2001) all found a greater level of genetic variation. Furthermore, these methods found significant population differentiation in P. monodon between Australia and SE Asia (Benzie et al., 1992, 2002; Klinbunga et al., 1998, 1999; Tassanakajon et al., 1998b; Brooker et al., 2000; Supungul et al., 2000; Xu et al., 2001; Sugama et al., 2002).…”

Section: Introductionmentioning

confidence: 99%

Population genetic structure of the tiger prawn (Penaeus monodon) in the coastal waters of South China, based on mitochondrial DNA control region sequences

Zhou

Jiang

et al. 2009

Journal of Applied Ichthyology

View full text Add to dashboard Cite

Summary Genetic variation and population structure of Penaeus monodon in the coastal waters of South China were detected using mitochondrial DNA control region sequences. Eighty individuals were collected at Sanya, Shenzhen, Zhanjiang and Beihai; 69 haplotypes with 157 polymorphic sites were detected. Nucleotide diversity (π) of the combined samples (6.16 ± 3.01%) was much higher than many other species in Chinese seas, such as Penaeus japonicus, Portunus trituberculatus, and Acanthopagrus schlegeli. Genetic differentiation was significant between Beihai and Sanya (pairwise FST = 0.09836, P < 0.05), and between Beihai and Shenzhen (pairwise FST = 0.12153, P < 0.05). Significant genetic differentiation among all populations was found by analysis of molecular variance (amova) (FST = 0.053, P = 0.037 < 0.05). The upgma dendrogram of the four populations showed Sanya and Shenzhen as the closest to each other, with Beihai having the greatest genetic distance from Sanya and Shenzhen. The tiger prawn of the coastal waters of South China should therefore be bred as two separated stocks, avoiding inbreeding or outbreeding selection of P. monodon in the captive breeding program. According to our results one source population is Beihai, and the others are from Sanya and Shenzhen.

show abstract

“…Despite its economic importance, however, there is very limited information on the evolution and colonization of P. Monodon in the Indo-Pacific region. Most genetic studies have been limited to P. monodon indigenous to regions including Australia (Mulley and Latter 1980;Benzie et al 1992Benzie et al , 1993Brooker et al 2000), Thailand (Tassanakajon et al 1997;Supungul et al 2000;Klinbunga et al 2001), India ), Indonesia , the Philippines (Xu et al 2001), and South Africa (Forbes et al 1999). A few studies have examined genetic diversity between major populations distributed more widely such as eastern Africa, Southeast Asia and Australia (Bouchon et al 1994;Duda and Palumbi 1999;Benzie et al 2002;You et al 2008).…”

Section: Introductionmentioning

confidence: 99%

Genetic analysis of Black Tiger shrimp (Penaeus monodon) across its natural distribution range reveals more recent colonization of Fiji and other South Pacific islands

Waqairatu

Dierens

Cowley

et al. 2012

Ecology and Evolution

View full text Add to dashboard Cite

The Black Tiger shrimp (Penaeus monodon) has a natural distribution range from East Africa to the South Pacific Islands. Although previous studies of Indo‐Pacific P. monodon have found populations from the Indian Ocean and Australasia to differ genetically, their relatedness to South Pacific shrimp remains unknown. To address this, polymorphisms at eight shared microsatellite loci and haplotypes in a 418‐bp mtDNA‐CR (control region) sequence were examined across 682 P. monodon from locations spread widely across its natural range, including the South Pacific islands of Fiji, Palau, and Papua New Guinea (PNG). Observed microsatellite heterozygosities of 0.82–0.91, allele richness of 6.85–9.69, and significant mtDNA‐CR haplotype variation indicated high levels of genetic diversity among the South Pacific shrimp. Analysis of microsatellite genotypes using a Bayesian STRUCTURE method segregated Indo‐Pacific P. monodon into eight distinct clades, with Palau and PNG shrimp clustering among others from Southeast Asia and eastern Australia, respectively, and Fiji shrimp clustering as a distinct group. Phylogenetic analyses of mtDNA‐CR haplotypes delineated shrimp into three groupings, with shrimp from Fiji again being distinct by sharing no haplotypes with other populations. Depending on regional location, the genetic structures and substructures identified from the genotyping and mtDNA‐CR haplotype phylogeny could be explained by Metapopulation and/or Member–Vagrant type evolutionary processes. Neutrality tests of mutation‐drift equilibrium and estimation of the time since population expansion supported a hypothesis that South Pacific P. monodon were colonized from Southeast Asia and eastern Australia during the Pleistocene period over 60,000 years ago when land bridges were more expansive and linked these regions more closely.

show abstract

Microsatellite Polymorphism and the Population Structure of the Black Tiger Shrimp (Penaeus monodon) in Thailand

Cited by 59 publications

References 22 publications

Genetic variability of the blue and red shrimp Aristeus antennatus in the Western Mediterranean Sea inferred by DNA microsatellite loci

Genetic variability of the blue and red shrimp Aristeus antennatus in the Western Mediterranean Sea inferred by DNA microsatellite loci

Population genetic structure of the tiger prawn (Penaeus monodon) in the coastal waters of South China, based on mitochondrial DNA control region sequences

Genetic analysis of Black Tiger shrimp (Penaeus monodon) across its natural distribution range reveals more recent colonization of Fiji and other South Pacific islands

Contact Info

Product

Resources

About