Microsatellite variation and evolution in the Peromyscus maniculatus species group

Chirhart, Scott E.; Honeycutt, Rodney L.; Greenbaum, Ira F.

doi:10.1016/j.ympev.2004.10.018

Cited by 32 publications

(21 citation statements)

References 43 publications

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“…In the last decade, microsatellite analysis has been used successfully to infer accurate phylogenetic relationships (58). The phylogeny proposed here is based on a microsatellite analysis of 19 polymorphic loci, since several recent studies using between 5 and 20 loci provided strong phylogenetic signals and accurate phylogenetic reconstructions in both plant and vertebrates species (6,46,52,54). Several lines of evidence suggest that microsatellite-based phylogeny is robust and can be trusted.…”

Section: Discussionmentioning

confidence: 99%

Evolution of Endogenous Sequences of Banana Streak Virus : What Can We Learn from Banana ( Musa sp.) Evolution?

Gayral

Blondin

Guidolin

et al. 2010

J Virol

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. Although eBSVs probably arose from accidental events, infectious eBSVs constitute an extreme case of parasitism, as well as a newly described strategy for vertical virus transmission in plants. We investigated the early evolutionary stages of infectious eBSV for two distinct BSV species-GF (BSGFV) and Imové (BSImV)-through the study of their distribution, insertion polymorphism, and structure evolution among selected banana genotypes representative of the diversity of 60 wild Musa species and genotypes. To do so, the historical frame of host evolution was analyzed by inferring banana phylogeny from two chloroplast regions-matK and trnL-trnF-as well as from the nuclear genome, using 19 microsatellite loci. We demonstrated that both BSV species integrated recently in banana evolution, circa 640,000 years ago. The two infectious eBSVs were subjected to different selective pressures and showed distinct levels of rearrangement within their final structure. In addition, the molecular phylogenies of integrated and nonintegrated BSVs enabled us to establish the phylogenetic origins of eBSGFV and eBSImV.

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Section: Discussionmentioning

confidence: 99%

Evolution of Endogenous Sequences of Banana Streak Virus : What Can We Learn from Banana ( Musa sp.) Evolution?

Gayral

Blondin

Guidolin

et al. 2010

J Virol

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“…Although microsatellite markers have been successfully applied to phylogenetic reconstructions of various taxa (Estoup et al, 1995;Harr et al, 1998;Petren et al, 1999;Richard and Thorpe, 2001;Peréz et al, 2002;Orsini et al, 2004;Chirhart et al, 2005;Hughes et al, 2005;Kankare et al, 2005;Knaden et al, 2005), this study revealed their limits to estimate diver- 10. 746 (6.174-15.691) gence between the crested newt species.…”

Section: Discussionmentioning

confidence: 78%

“…Microsatellites may be good candidates for such studies due to their high mutation rate and polymorphism (Jarne and Lagoda, 1996;Estoup and Cornuet, 2000;Goldstein and Schlötterer, 2000;Ellegren, 2004). Many empirical studies have shown that microsatellites might be successfully employed in phylogenetic reconstruction (Estoup et al, 1995;Harr et al, 1998;Petren et al, 1999Petren et al, , 2005Richard and Thorpe, 2001;Peréz et al, 2002;Orsini et al, 2004;Chirhart et al, 2005;Hughes et al, 2005;Kankare et al, 2005;Knaden et al, 2005), although in some cases they did not give a phylogeny congruent with other genetic markers or theoretical expectations (Peatkau et al, 1997). The number of studies successfully applying microsatellites exceeds the number of studies showing their limits in phylogenetic reconstruction, although this shift might be caused by failure to publish negative results.…”

Section: Introductionmentioning

confidence: 99%

Can microsatellite markers resolve phylogenetic relationships between closely related crested newt species (Triturus cristatus superspecies)?

Mikulíček

Crnobrnja‐Isailović²,

Piálek

2007

Amphib Reptilia

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Theoretical and empirical studies revealed that fast evolving microsatellite markers might be successfully employed in phylogenetic reconstruction. In this study we used seven highly polymorphic microsatellite loci and six different genetic distances to infer the performance of microsatellites in estimation of phylogenetic relationships between closely related crested newt species (Triturus cristatus superspecies). Many intraspecific distances exceeded interspecific values likely due to loss of genetic distance linearity in time, revealing that none of them was able to estimate divergence between the species. The Neighbor-joining trees constructed on the basis of genetic distances showed trichotomies (three-way polychotomies) and low bootstrap support at the species level. This study thus revealed limits of microsatellites to estimate phylogenetic relationships between the crested newt taxa.

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“…Population analysis based on microsatellite markers can discriminate closely related species (Baliraine et al 2003) and shed light to their phylogenetic relationships (Goldstein and Pollock 1997;Schlötterer 2001;Chirhart et al 2005). In the present study, we did not perform a phylogenetic analysis.…”

Section: Discussionmentioning

confidence: 99%

Isolation and characterization of microsatellite markers from the Mediterranean fruit fly, Ceratitis capitata: cross-species amplification in other Tephritidae species reveals a varying degree of transferability

et al. 2009

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The Mediterranean fruit fly, Ceratitis capitata, is a pest of major economic importance and has become a model for the development of SIT control programs for insect pests. Significant information has been accumulated on classical and population genetics of this species during the past 2 decades. However, the availability of molecular markers is limited. Here, we present the isolation and characterization of 159 microsatellite clones and the development of 108 polymorphic microsatellite markers for this insect pest. Mapping by in situ hybridization to polytene chromosomes of 21 microsatellite clones enriched the cytogenetic map that was previously constructed by our group. The enriched map provides a large number of STSs for future genome mapping projects. Cross-species amplification of these microsatellite loci in 12 Tephritidae species and sequence analysis of several amplification products indicated a varying degree of transferability and their possible usefulness as molecular and genetic markers in these species where genetic and molecular tools are limited.

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Microsatellite variation and evolution in the Peromyscus maniculatus species group

Cited by 32 publications

References 43 publications

Evolution of Endogenous Sequences of Banana Streak Virus : What Can We Learn from Banana ( Musa sp.) Evolution?

Evolution of Endogenous Sequences of Banana Streak Virus : What Can We Learn from Banana ( Musa sp.) Evolution?

Can microsatellite markers resolve phylogenetic relationships between closely related crested newt species (Triturus cristatus superspecies)?

Isolation and characterization of microsatellite markers from the Mediterranean fruit fly, Ceratitis capitata: cross-species amplification in other Tephritidae species reveals a varying degree of transferability

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