Microsporidia are obligate intracellular parasites that infect eukaryotic cells and have emerged as major opportunistic human pathogens. Due to the difficulties in definitive laboratory diagnosis and insufficient knowledge, ocular microsporidiosis is infrequently reported in India. To improve diagnostic facilities, we have developed a novel duplex PCR (dPCR) for the simultaneous identification of both genera and species of isolates with microsporidian aetiology that cause keratitis. The material scraped from the corneas of 12 clinically diagnosed microsporidial keratitis patients was subjected to routine microbiological examinations and molecular diagnosis using a novel dPCR that targeted the small-subunit rRNA gene (SSU-rRNA) of microsporidia and Vittaforma corneae using genus-and species-specific primers. Of the 12 corneal scrapes, 6 showed positive results in smears, while dPCR provided positive amplification with both panmicrosporidial and V. corneae species-specific primers for 9 corneal scrapes. The results were validated by sequencing and BLAST analysis. The sensitivity of this novel dPCR method was higher than that of conventional microscopy in the diagnosis of corneal microsporidial infection. dPCR with specific primers is potentially more sensitive, specific and depends less on more complicated methods for exact identification of the aetiology of microsporidial keratitis.
INTRODUCTIONMicrosporidial infection is an important emerging opportunistic disease, and is caused by a group of obligate intracellular protozoan parasites belonging to the phylum Microspora, in immunocompromised and immunocompetent patients (Didier, 2005;Abreu-Acosta et al., 2005). Over 1300 species of microsporidia belonging to 160 genera have been described, of which, Nosema and Encephalitozoon are well-known ocular pathogens (Witner & Weiss, 1999;Sharma et al., 2011). Ocular microsporidiosis has been classified pathologically as either stromal or epithelial, and its pathogenesis varies according to the immune status of the patients (Cali et al. 1991;Schwartz et al., 1993). Ocular microsporidiosis, although uncommon, occurs mainly in two forms: keratoconjunctivitis form, mostly seen in immunocompromised individuals; and stromal keratitis form, seen in immunocompetent individuals. Although an enormous amount of literature is available on microsporidiosis, knowledge of ocular manifestations is still minimal. In spite of the fact that a variety of diagnostic techniques have been described, laboratory diagnosis still remains difficult, and reports on ocular manifestations, especially in India remain scant (Sharma et al., 2011; Joseph et al., 2006a, b). Hence, a concerted approach was needed to overcome the shortcomings to allow accurate identification, which has led of late to molecular methods (Fedorko & Hijazi, 1996;Reddy et al., 2011;Joseph et al., 2006c). A number of conventional species-specific PCR and probe-based real-time PCRs have been used for the detection of different microsporidian species (Menotti et al., 2003;Polley et a...