Neutron diffraction with empirical potential structure refinement was used to investigate the bulk liquid nanostructure of mixtures of choline arginate (Ch[Arg]), choline lysinate (Ch[Lys]), and water at mole ratios of 1Ch[Arg]:1Ch[Lys]:6H 2 O (balanced), 1Ch[Arg]:1Ch[Lys]:20H 2 O (balanced dilute), 3Ch[Arg]:1Ch-[Lys]:12H 2 O (Arg − rich), and 1Ch[Arg]:3Ch[Lys]:12H 2 O (Lys − rich). The Arg − and Lys − anions tend not to associate due to electrostatic repulsion between charge groups and weak anion− anion attractions. This means that the local ion structures around the anions in these mixtures resemble the parent single-component systems. The bulk liquid nanostructure varies with the Arg − :Lys − ratio. In the Lys − -rich mixture (1Ch[Arg]:3Ch[Lys]:12H 2 O), Lys − side chains cluster into a continuous apolar domain separated from a charged domain of polar groups. In the balanced mixture (1Ch[Arg]:1Ch[Lys]:6H 2 O), Lys − side chains form discrete apolar aggregates within a continuous polar domain of Arg − , Ch + , and water, and in the Arg − -rich mixture (3Ch[Arg]:1Ch[Lys]:12H 2 O), the distribution of Lys − and Arg − is nearly homogeneous. Finally, in the balance dilute system (1Ch[Arg]:1Ch[Lys]:20H 2 O), a percolating water domain forms.