Microplastics (MPs) contamination is a well-established impact in oceans, but integrated approaches combining simultaneous analyzes of biotic and abiotic components are scarce. This study addresses this gap, demonstrating Atherinella brasiliensis (fish species) ingestion of MPs and comparing with the contaminant presence in water and sediment. Three Ubatuba beaches (exposed, calm and sheltered estuary) were surveyed for fish, water, and sediment components in summer and winter. Environmental data evidenced spatial and seasonal differences (PCA/ANOVA). Presence of synthetic particles (SPs) in fish was high (~38%). Maximum concentrations occurred in the estuary, for water (490 SPs/m³), and in the exposed beach, for sediment (62 SPs/50g). Fibers format predominated in all components. Fish preference for blue color seems to occur. Significant statistical relationships were determined for fish length and SPs size and between SPs concentrations in water and fish. The chemical identities (μ-FTIR spectra) polypropylene, polyethylene, polyamide, polyester, and cardboard/cellulose predominated. Influences of local hydrodynamics (e.g., SPs sizes) and reduction in tourism during Covid-19 epidemic (e.g.,less SPs in summer) are discussed. This study confirms environmental contamination by SPs (mostly MPs) in Ubatuba beaches, affecting fish through direct water column ingestion. Urgent actions from authorities and changes in local user’s habits are crucial.