Atlantic cod Gadus morhua in US waters are currently managed as 2 stocks: (1) a Gulf of Maine stock and (2) a Georges Bank and south stock. This designation is decades old and warrants re-evaluation in light of concerns that fisheries management units may not reflect biologically meaningful population units. In this study, we used 10 microsatellite loci, the PanI locus, and 5 single nucleotide polymorphism markers to characterize the population genetic structure of cod in US waters. We found significant differentiation among temporally and spatially divergent populations of cod (global F ST = 0.0044), primarily stemming from 2 potentially non-neutral loci, and evidence for a population structure that strongly contradicts the current 2-stock management model. This genetic structure was stable over a 5 yr period. Our results indicate that cod in US waters are broadly structured into 3 groups: (1) a northern spring-spawning coastal complex in the Gulf of Maine (GOM), (2) a southern complex consisting of winter-spawning inshore GOM, offshore GOM and sites south of Cape Cod, Massachusetts, and (3) a Georges Bank population. The strongest differentiation occurs between populations in the northern and southern complex (mean F ST = 0.0085), some of which spawn in the same bays in different seasons. By means of mixture analysis, young-of-the-year fish sampled on juvenile nurseries were assigned to the spawning complex of their origin. Our findings contribute to a growing body of knowledge that Atlantic cod and other marine fish populations are structured on a finer scale than previously thought and that this structure supports biocomplexity and locally adapted populations. As such, it may be warranted to re-evaluate current management units and tailor management plans toward this finer scale.KEY WORDS: Atlantic cod · Microsatellite DNA · Single nucleotide polymorphism · Population genetic structure · Stock identification · Gadus morhua
Resale or republication not permitted without written consent of the publisherMar Ecol Prog Ser 410: [177][178][179][180][181][182][183][184][185][186][187][188][189][190][191][192][193][194][195] 2010 the importance of processes that limit dispersal and promote self-replenishment of local populations, such as sedentary adult life history strategies (Robichaud & Rose 2004, Howell et al. 2008, spawning site fidelity (Taggart 1997), natal homing (Thorrold et al. 2001, Svedäng et al. 2007), egg and larval retention (Jones et al. 1999, 2005, Bradbury et al. 2008) and local adaptation (McIntyre & Hutchings 2003, Conover et al. 2006, Hutchings et al. 2007). The implications of such fine-scale population structure are important for effective management (Palumbi 2003, Bradbury et al. 2008, Reiss et al. 2009).One marine fish species known to exhibit fine-scale population structure in parts of its distribution is Atlantic cod Gadus morhua L. (see reviews in Waldman 2005 andCarvalho 2008). Atlantic cod is one of the most commercially important marine fishes in the world and comprises a p...