During the Late Precambrian, the North Eastern Desert of Egypt underwent significant crustal evolution in a tectonic environment characterized by strong extension. The Neoproterozoic alkali feldspar granite found in the Homret El Gergab area is a part of the Arabian Nubian Shield and hosts significant rare metal mineralization, including thorite, uranothorite, columbite, zircon, monazite, and xenotime, as well as pyrite, rutile, and ilmenite. The geochemical characteristics of the investigated granite reveal highly fractionated peraluminous, calc–alkaline affinity, A-type granite, and post-collision geochemical signatures, which are emplaced under an extensional regime of within-plate environments. It has elevated concentrations of Rb, Zr, Ba, Y, Nb, Th, and U. The zircon saturation temperature ranges from 753 °C to 766 °C. The formation of alkali feldspar rare metal granite was affected by extreme fractionation and fluid interactions at shallow crustal levels. The continental crust underwent extension, causing the mantle and crust to rise, stretch, and become thinner. This process allows basaltic magma from the mantle to be injected into the continental crust. Heat and volatiles were transferred from these basaltic bodies to the lower continental crust. This process enriched and partially melted the materials in the lower crust. The intrusion of basaltic magma from the mantle into the lower crust led to the formation of A-type granite.