The
interaction of contaminants and nutrients with soil constituents
is controlled by processes in intergranular and intragranular pore
spaces of organic matter or/and common secondary minerals such as
ferrihydrite, ∼Fe3+
10O14(OH)2. This contribution shows that distribution and clustering
of the contaminants As, P, Pb, Si, Sn, and Zn in a porous ferrihydrite
grain is greatly affected by the heterogeneous size distribution and
chemical composition of the pores as well as the ability of their
polyhedra to polymerize with the same type of polyhedron. Transmission
electron microscopy (TEM) and atom probe tomography (APT) studies
are conducted on focused ion beam (FIB) sections extracted from a
porous ferrihydrite grain from the smelter-impacted topsoil in Sudbury,
Ontario, Canada. The ferrihydrite grain has pore spaces ranging in
diameter from tens to hundreds of nanometers. TEM and scanning-TEM
studies indicate that the surfaces of the pore walls are enriched
in Si. APT data in conjunction with First Near Neighbor (1NN) analyses
indicate different degrees of clustering of Pb, As, Sn, Zn, Si, and
P within the sample and selected domains. Careful evaluations of 3D
atomic plots and 1NN distances indicates the occurrence of polymerized
arsenite-, silica-, Sn-, and Zn-polyhedra within pore spaces of the
ferrihydrite. Deciphering adsorption, polymerization, and nucleation
processes in porous Fe-(hydr)oxides and other soil constituents requires
multianalytical approaches and, in this regard, we discuss the advantages
and disadvantages of the combination of TEM and APT for characterizing
complex environmental samples at the atomic to nanometer scale.