The paper presents a comparative analysis of approaches to the construction and implementation of safety management systems in in transport ergatic systems with an emphasis on the study of changes in understanding the role and place of the human factor in human-machine systems on transport. This article presents the results of a study of the evolution of approaches to taking into account the human factor in ergatic systems on transport and the differences in the implementation of these approaches in safety management systems in aviation and the maritime fleet. Lack of attention to socio-psychological factors (human factor) and fatigue management in the fleet was revealed. Using the example of taking into account the influence of the human factor and managing the fatigue of aircraft crew members (Fatigue Risk Management System), a higher level of development of safety management systems in aviation is demonstrated in comparison with the maritime fleet. The directions of development of the control system in the marine fleet are proposed that meet the current and future needs of the fleet. The study used retrospective analysis, information retrieval, analysis of bibliographic sources, comparison, analysis and synthesis, induction, logical method. During the study, the current regulations and recommendations of ICAO, IATA, IMO, ILO, scientific publications on the topic of the study were used. As a result, the statement is substantiated that a modern safety management system in the fleet should use data-driven decision management (DDDM).