Intensive agriculture has led to the increasing application of pesticides, such as malathion, thus generating large volumes of untreated cropland wastewater (CropWW). In this work, a hybrid system constructed wetlands (CW) coupled in continuous with an optimized UV/H2O2 pretreatment was evaluated for the efficient removal of malathion contained in CropWW. In the first stage, 90 min UV irradiation time (UV IR) and 65 mM hydrogen peroxide (H2O2) were identified as optimal operation parameters through a central composite design. The second stage consisted of CW planted with Phragmites australis collected from the agricultural discharge area and operated as a piston flow reactor. Furthermore, CW hydraulic residence times (HRT) of 1, 2 and 3 days, including hydraulic coupling, were evaluated. The removal efficiencies obtained in the first stage (UV/H2O2) were 94 ± 2.5% of malathion and 45 ± 2.5% of total organic carbon (TOC). In stage two (CW) 65 ± 9.6% TOC removal was achieved during the first 17 days, from which around 24% was associated to the biosorption of malathion byproducts. Subsequently, and until the operation ends, CW removed about 80% of TOC for 2 and 3 days HRT, with no significant differences (p > 0.2), which is higher than those reported in several studies involving only advanced oxidation processes (AOP) with UV IR times above 240 min and even for systems using catalysts. The results obtained indicate that the system UV/H2O2-CW is a technically suitable option for the treatment of CropWW with a high content of malathion mainly found in developing countries. Moreover, the hybrid system proposed also represent significant reduction in the size of the treatment plant.