Selection for mutants which release glucose repression of the CYB2 gene was used to identify genes which regulate repression of mitochondrial biogenesis. We have identified two of these as the previously described GRR1/CAT80 and ROX3 genes. Mutations in these genes not only release glucose repression of CYB2 but also generally release respiration of the mutants from glucose repression. In addition, both mutants are partially defective in CYB2 expression when grown on nonfermentable carbon sources, indicating a positive regulatory role as well. ROX3 was cloned by complementation of a glucose-inducible flocculating phenotype of an amber mutant and has been mapped as a new leftmost marker on chromosome 2. The ROX3 mutant has only a modest defect in glucose repression of GAL1 but is substantially compromised in galactose induction of GAL1 expression. This mutant also has increased SUC2 expression on nonrepressing carbon sources. We have also characterized the regulation of CYB2 in strains carrying null mutations in two other glucose repression genes, HXK2 and SSN6, and show that HXK2 is a negative regulator of CYB2, whereas SSN6 appears to be a positive effector of CYB2 expression.When Saccharomyces cerevisiae strains are grown on glucose, they down regulate the biogenesis of mitochondria such that the volume occupied by mitochondria is decreased from 12 to 14% of the total cellular volume under derepressing conditions to 3 to 4% under repressing conditions. The glucose-repressed mitochondria also have poorly differentiated inner membrane cristae (51). Although this effect of glucose on yeast mitochondria was discovered over 40 years ago (14), surprisingly little is known about the mechanism of glucose repression of mitochondrial biogenesis.Much of what we know about glucose repression is from studies of the SUC and GAL genes, which are involved in the regulation of sucrose and galactose metabolism, respectively (27). Some genes which regulate repression of sucrose and galactose catabolic enzymes also regulate at least some mitochondrial enzymes. For example, mutations in HXK2, which encodes one of the hexokinases, release repression of mitochondrial cytochrome c reductase and cytochrome c oxidase activities (38). Mutations in CYC8 (SSN6) and CYC9 (TUP1) both cause overexpression of iso-2-cytochrome c (46), and mutations in GRR1 and CAT4 allow iso-1-cytochrome c to escape glucose repression (17, 48). However, the extent to which these genes may be general regulators of mitochondrial biogenesis remains unknown.Boker-Schmitt and coworkers isolated two constitutively highly respiring mutants, CCR-91 and CCR-96, in which respiration, mitochondrial cytochromes, and mitochondrial DNA synthesis were released from glucose repression (2). Significantly, the activities of maltase and malate synthase, two nonmitochondrial glucose-regulated enzymes, were not changed in the CCR-91 mutant, indicating that glucose repression of mitochondrial biogenesis is at least partially independent of repression of enzymes involved in disaccha...