Members of genus Ophidascaris are common parasitic roundworms in snakes that cause gastric granulomas, adenocarcinomas, intestinal obstruction, death, and serious economic losses in snakes and their products. To identify molecular marker of Ophidascaris baylisi from the Burmese python (Python molurus bivittatus), we amplified internal transcribed spacer (ITS) sequence from this roundworm and analyzed their homology and phylogeny. The amplified ITS sequence length was 1140 bp, comprising the complete ITS1, 5.8S, and ITS2 sequences and a partial 28S sequence. The ITS1+ sequence was homologous (85.8% homology) to the related species Ophidascaris robertsi. The phylogenetic tree revealed a close genetic distance between O. baylisi and O. robertsi, which formed a separate branch within family Ascaridae clade. The results indicated that the identified ITS sequence could be a good molecular marker for further study on the molecular classification and genetic variation of Ophidascaris species.