Mitogenomic Evidence for an Indo-West Pacific Origin of the Clupeoidei (Teleostei: Clupeiformes)

Lavoué, Sébastien; Miya, Masaki; Musikasinthorn, Prachya; Chen, Wei‐Jen; Nishida, Mutsumi

doi:10.1371/journal.pone.0056485

Cited by 71 publications

(86 citation statements)

References 101 publications

(118 reference statements)

Supporting

Mentioning

Contrasting

Order By: Relevance

“…Previously published coI sequences for S . albella , amplified in Lakra et al () and Lavoué et al (), have matched instead with that of the WIO clade of S . gibbosa amplified in this study, as well as with other published sequences of S .…”

Section: Resultsmentioning

confidence: 99%

Integrative approach revises the frequently misidentified species of Sardinella (Clupeidae) of the Indo‐West Pacific Ocean

Stern

Rinkevich

Goren

2016

Journal of Fish Biology

View full text Add to dashboard Cite

To deal with the difficulties of species differentiation and delimitation among the commercially important sardines from the genus Sardinella, an integrative approach was adopted, incorporating traditional taxonomy with four DNA markers (coI, cytb, 16s and nuclear rag2). Combining these methodologies has enabled a thorough re-description of three of the most common species of Sardinella of the Indo-west Pacific Ocean: white sardinella Sardinella albella, fringescale sardinella Sardinella fimbriata and the goldstripe sardinella Sardinella gibbosa, as well as a description of a new species, Gon's sardinella Sardinella goni, from the island of Boracay, Philippines. In addition, extensive widespread sampling of S. gibbosa reveals a significant genetic separation between the populations from the western Indian Ocean and the west Pacific Ocean, despite no supporting morphological differentiation. An updated morphological key of the species of Sardinella of the Indo-west Pacific Ocean is also provided in order to minimize future misidentifications within these economically important taxa. Finally, the genetic and morphological variabilities within and between the investigated species are used to discuss their biogeographical distribution and possible processes of speciation.

show abstract

Section: Resultsmentioning

confidence: 99%

Integrative approach revises the frequently misidentified species of Sardinella (Clupeidae) of the Indo‐West Pacific Ocean

Stern

Rinkevich

Goren

2016

Journal of Fish Biology

View full text Add to dashboard Cite

show abstract

“…The family Sundasalangidae is no longer recognized because Sundasalanx is nested within Clupeidae (see also [172]). Clupeidae also includes the round herrings (subfamily Dussumieriinae [171]), sometimes placed in the family Dussumieriidae [62].

Chirocentridae

Clupeidae (not monophyletic in Fig.

…”

Section: Construction and Contentmentioning

confidence: 99%

Phylogenetic classification of bony fishes

et al. 2017

Self Cite

View full text Add to dashboard Cite

BackgroundFish classifications, as those of most other taxonomic groups, are being transformed drastically as new molecular phylogenies provide support for natural groups that were unanticipated by previous studies. A brief review of the main criteria used by ichthyologists to define their classifications during the last 50 years, however, reveals slow progress towards using an explicit phylogenetic framework. Instead, the trend has been to rely, in varying degrees, on deep-rooted anatomical concepts and authority, often mixing taxa with explicit phylogenetic support with arbitrary groupings. Two leading sources in ichthyology frequently used for fish classifications (JS Nelson’s volumes of Fishes of the World and W. Eschmeyer’s Catalog of Fishes) fail to adopt a global phylogenetic framework despite much recent progress made towards the resolution of the fish Tree of Life. The first explicit phylogenetic classification of bony fishes was published in 2013, based on a comprehensive molecular phylogeny (www.deepfin.org). We here update the first version of that classification by incorporating the most recent phylogenetic results.ResultsThe updated classification presented here is based on phylogenies inferred using molecular and genomic data for nearly 2000 fishes. A total of 72 orders (and 79 suborders) are recognized in this version, compared with 66 orders in version 1. The phylogeny resolves placement of 410 families, or ~80% of the total of 514 families of bony fishes currently recognized. The ordinal status of 30 percomorph families included in this study, however, remains uncertain (incertae sedis in the series Carangaria, Ovalentaria, or Eupercaria). Comments to support taxonomic decisions and comparisons with conflicting taxonomic groups proposed by others are presented. We also highlight cases were morphological support exist for the groups being classified.ConclusionsThis version of the phylogenetic classification of bony fishes is substantially improved, providing resolution for more taxa than previous versions, based on more densely sampled phylogenetic trees. The classification presented in this study represents, unlike any other, the most up-to-date hypothesis of the Tree of Life of fishes.Electronic supplementary materialThe online version of this article (doi:10.1186/s12862-017-0958-3) contains supplementary material, which is available to authorized users.

show abstract

“…The Clupeidae reach their highest diversity in the Indo-West Pacific [23], a region also proposed to be the geographic origin of this family [24]. Within the Indo-West Pacific, the goldstripe sardinella Sardinella gibbosa (Bleeker, 1849) is among the most abundant and widespread marine pelagic species.…”

Section: Introductionmentioning

confidence: 99%

Hidden Diversity in Sardines: Genetic and Morphological Evidence for Cryptic Species in the Goldstripe Sardinella, Sardinella gibbosa (Bleeker, 1849)

et al. 2014

View full text Add to dashboard Cite

Cryptic species continue to be uncovered in many fish taxa, posing challenges for fisheries conservation and management. In Sardinella gibbosa, previous investigations revealed subtle intra-species variations, resulting in numerous synonyms and a controversial taxonomy for this sardine. Here, we tested for cryptic diversity within S. gibbosa using genetic data from two mitochondrial and one nuclear gene regions of 248 individuals of S. gibbosa, collected from eight locations across the Philippine archipelago. Deep genetic divergence and subsequent clustering was consistent across both mitochondrial and nuclear markers. Clade distribution is geographically limited: Clade 1 is widely distributed in the central Philippines, while Clade 2 is limited to the northernmost sampling site. In addition, morphometric analyses revealed a unique head shape that characterized each genetic clade. Hence, both genetic and morphological evidence strongly suggests a hidden diversity within this common and commercially-important sardine.

show abstract

Mitogenomic Evidence for an Indo-West Pacific Origin of the Clupeoidei (Teleostei: Clupeiformes)

Cited by 71 publications

References 101 publications

Integrative approach revises the frequently misidentified species of Sardinella (Clupeidae) of the Indo‐West Pacific Ocean

Integrative approach revises the frequently misidentified species of Sardinella (Clupeidae) of the Indo‐West Pacific Ocean

Phylogenetic classification of bony fishes

Hidden Diversity in Sardines: Genetic and Morphological Evidence for Cryptic Species in the Goldstripe Sardinella, Sardinella gibbosa (Bleeker, 1849)

Contact Info

Product

Resources

About