The Mixed Gear Modeling Method, developed by the authors, requires manipulation of large Points Clouds, situated in a spatial volume. Regular Points Cloud software's and manipulation techniques deals with points situated on surfaces, points obtained with scanning techniques. Generating points Clouds as in the developed methods cannot be manipulated with this usual techniques, therefore it is necessary to develop new techniques: filtering algorithm. The difficulties to develop a new approach consist in the spatial placement of the points, in the particular shape of the Clouds. As the generated points are partially concave and partially convex the usual software tools are not working properly with this kind of Points Clouds, raising some particular issues. The present paper shows some results from the earlier stage of the development, showing the difficulties raised during the application of different Points Cloud filtering algorithms.