The aim of this study was to evaluate the adverse effects of mixed chimaerism (MC) on survival outcomes and to assess the ability of different factors to predict MC in severe aplastic anaemia (SAA) patients after HLA-matched donor transplantation. A retrospective study was conducted in 103 consecutive SAA patients who received matched related (MRD) or unrelated donor (MUD) transplantation.The cumulative incidences of mixed chimaerism were 17.8 ± 0.2% and 25.0 ± 0.8% in the MRD and MUD cohorts, respectively (P = 0.432). Patients with mixed chimaerism had signi cantly poorer 10-year failurefree survival (FFS) than those with donor chimaerism (35.0% vs. 87.0%, P < 0.001). A multivariable model identi ed independent adverse predictors of mixed chimaerism, including patient age and ferritin level at transplantation. The incidences of mixed chimaerism were 62.5%, 30.8% and 5.4% in the high-(2 factors), intermediate-(1 factor) and low-risk (0 factor) groups, respectively (P < 0.001). The corresponding FFS rates were 37.5%, 75.3% and 83.6%, respectively (P = 0.018), at the nal follow-up. Therefore, patients with mixed chimaerism suffered poorer long-term FFS, and patients with high-risk scores will be more likely to develop mixed chimaerism. Thus, more intensive conditioning might be recommended for these high-risk patients.