Secondary succession that occurs on abandoned farmlands is an important source of biomass carbon stocks. Both direct and indirect tree biomass estimation methods are applied on forest lands. Using empirical data from 148 uprooted trees, we developed a seemingly unrelated mixed-effects models system for the young silver birch that grows on post agricultural lands in central Poland. Tree height, biomass of stem, branches, foliage, and roots are used as dependent variables; the diameter at breast height is used as the independent variable. During model elaboration we used restricted cubic spline: 5 knots at the quantiles (0.05, 0.275, 0.5, 0.725, and 0.95) of diameter at breast height provided sufficiently flexible curves for all biomass components. In this study, we demonstrate the use of the model system through cross-model calibration of the biomass component model using tree height measured from 0, 2, 3, and 4 available extreme trees feature in the plot in question. A different number of extreme trees were measured for final model system and our results indicated that for all analyzed components, random-effect predictions are characterized by higher accuracy than fixed-effects predictions.