The aim of this work was to the obtaining novel mixed-mode stationary phases with increased hydrophilicity and applying them in ion and hydrophilic interaction liquid chromatography. The resins were obtained by the sequential covalent attachment of branched polyethylenimine and polyelectrolytes synthesized from diepoxide and a secondary amine on the surface of epoxidized polystyrene–divinylbenzene. To increase the shielding degree of the polymer substrate, an additional polymerization of glycidol was carried out in the functional layer of the sorbent at an increased pH of the reaction medium. The synthesized phases possessed increased hydrophilicity compared to most resins based on a styrene–divinylbenzene copolymer with covalently attached layers. This was evidenced in the ion chromatography mode by a decrease in the relative retention of polarizable anions, weakly hydrated oxyhalides (up to a change in the elution order of the bromate), and haloacetic acids. In the hydrophilic interaction liquid chromatography mode, an increased hydrophilicity of the phases was confirmed by an increase in the retention factors of polar analytes, as well as by the reversal of the elution order of ascorbic and nicotinic acids as compared to the phases based on polystyrene–divinylbenzene presented in the literature. The low efficiency of the obtained stationary phases in the ion chromatography mode was noted, which is associated with slow mass transfer in the bulk polymer functional layer. The negative impact of the polymer layer on efficiency in hydrophilic interaction liquid chromatography is less pronounced due to the presumably smaller thickness of the part of the functional layer involved in this mode. The proposed method for the synthesis of resins ensures an increase in the efficiency, selectivity, and separation ability of sorbents in the hydrophilic interaction liquid chromatography mode as compared to phases based on a styrene–divinylbenzene copolymer described previously in the literature. The resulting highly hydrophilic resins makes it possible to separate a mixture of 9 nitrogenous bases and nucleosides in 18 min, 6 vitamins in 24 min, and 8 sugars in 11 min. Thus, the method of substrate hydrophilization proposed in this work is promising for improving the chromatographic characteristics of phases in the hydrophilic interaction liquid chromatography mode and can be used to create sorbents with increased selectivity and efficiency.