The characters of high frequency reciprocating equipment are quick starting and stopping, short range, high frequency and multi-freedom reciprocating motion. The inertia introduced by the high frequency reciprocating motion of a LED chip sorter has complicated effects on the positional accuracy. It is necessary to obtain dynamics of the sorting arm to suppress the vibration of the high frequency operation. The positioning precision and positioning time are affected by the natural vibration of the sorting arm by analyzing the displacement response. The paper verifies that the inherent vibration of the sorting arm has a crucial effect on its positioning precision and positioning time. Under static condition, due to the additional mass of the accelerometers, the research results show that there is no obvious difference in the experimental modal analysis (EMA) based on multi-type sensors. The modal parameters identified by accelerometers and strain gauges are very close. The modal parameters are obtained through the modal analysis method, which combines the strain modal analysis and operational modal analysis (OMA), under high frequency reciprocating motion. The paper verifies that the modal parameters of lightweight structure are very different in the static and operation. The key points of each mode are found by analyzing the modal amplitudes at different speeds which provide the guiding principle and basis for the dynamic optimization of the sorting arm mechanism.