Ionic polymers exhibit mechanical properties that can be widely tuned upon selectively charging them. However, the correlated structural and dynamical properties underlying the microscopic mechanism remain largely unexplored. Here, we investigate, for the first time, the structure and diffusion of randomly and end-functionalized ionic poly(dimethylsiloxane) (PDMS) melts with negatively charged bromide counterions, by means of atomistic molecular dynamics using a united atom model. In particular, we find that the density of the ionic PDMS melts exceeds the one of their neutral counterpart and increases as the charge density increases. The counterions are condensed to the cationic part of end-functionalized cationic PDMS chains, especially for the higher molecular weights, leading to a slow diffusion inside the melt; the counterions are also correlated more strongly to each other for the end-functionalized PDMS. Temperature has a weak effect on the counterion structure and leads to an Arrhenius type of behavior for the counterion diffusion coefficient. In addition, the charge density of PDMS chains enhances the diffusion of counterions especially at higher temperatures, but hinders PDMS chain dynamics. Neutral PDMS chains are shown to exhibit faster dynamics (diffusion) than ionic PDMS chains. These findings contribute to the theoretical description of the correlations between structure and dynamical properties of ion-containing polymers.