In the ongoing battle against infectious diseases, innovative nanotextured antipathogenic coatings provide promising avenues for preventing pathogens from spreading. Understanding their interactions at the micro/nanoscale is crucial for improving their design and efficacy. This work proposes a model for the interaction between pathogens and nanotextured antipathogenic coated surfaces. For this purpose, the forces and deformations experienced by pathogens upon contact with nanotextured surfaces are studied. To achieve this goal, a computational model based on the molecular dynamics software ESPResSo and, particularly, the Object-In-Fluid implementation, has been developed, extending the previous works of I. Jančigova et al. and G. Lazzini et al. More specifically, a Staphylococcus Aureus bacterium is modelled as an elastic cell represented by a triangular mesh and immersed in a computational Lattice-Boltzmann fluid. The size, shape and elastic properties of the pathogen cell are tuned, emulating those of Staphylococcus Aureus. A poly(methyl methacrylate) substrate laser-sintered with Ag nanoparticles is modelled with a triangular mesh, and the interactions between the cell and the substrate are introduced through a Lennard-Jones potential. The simulations performed reveal the influence of surface geometry and dispersion in the coated substrate, providing critical insights into designing more effective antibacterial surfaces that inhibit pathogen proliferation.